BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0327.p         (196 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2913 [R] COG0488 ATPase components of ABC transporters with d...   219   3e-57
PA4595 [R] COG0488 ATPase components of ABC transporters with du...   204   7e-53
VC0698 [R] COG0488 ATPase components of ABC transporters with du...   192   4e-49
PM0425 [R] COG0488 ATPase components of ABC transporters with du...   190   2e-48
yjjK [R] COG0488 ATPase components of ABC transporters with dupl...   190   2e-48

>RSc2913 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains Rso Ralstonia solanacearum
          Length = 555

 Score =  219 bits (558), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 113/122 (92%)

Query: 1   MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60
           M+QYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKST+LKIMAG+DK+IE
Sbjct: 1   MSQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTVLKIMAGLDKDIE 60

Query: 61  GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120
           GEA PMPNLNIGYLPQEPQLD  KTVR+EVES LGEV +AQ +L+AVY AYAE DADFD 
Sbjct: 61  GEATPMPNLNIGYLPQEPQLDPAKTVREEVESGLGEVMDAQKQLEAVYVAYAEPDADFDK 120

Query: 121 LA 122
           LA
Sbjct: 121 LA 122


>PA4595 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains Pae Pseudomonas aeruginosa
          Length = 554

 Score =  204 bits (520), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 111/122 (90%)

Query: 1   MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60
           MAQYV+TM+RVGKIVPPKR+ILKDISLSFFPGAKIGVLGLNG+GKSTLL+IMAG+D EIE
Sbjct: 1   MAQYVYTMHRVGKIVPPKREILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDTEIE 60

Query: 61  GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120
           GEA PMP +N+GYLPQEP+LD + TVR  VE A+G++ +AQA+LD VYAAYAE DADFDA
Sbjct: 61  GEARPMPGINVGYLPQEPKLDPQATVRDIVEEAVGQIKQAQARLDEVYAAYAEPDADFDA 120

Query: 121 LA 122
           LA
Sbjct: 121 LA 122


>VC0698 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains Vch Vibrio cholerae
          Length = 555

 Score =  192 bits (488), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/122 (76%), Positives = 106/122 (86%)

Query: 1   MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60
           MA+YV+TM+RV KIVPPKRQILKDISLSFFPGAKIGVLGLNG+GKSTLL+IMAGIDK+I+
Sbjct: 1   MAEYVYTMSRVSKIVPPKRQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDID 60

Query: 61  GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120
           GEA P P L +GYLPQEP+LD  KTVR+ VE A+ +V  A  +LD VYAAYAE DADFDA
Sbjct: 61  GEARPQPGLKVGYLPQEPKLDESKTVREVVEEAVADVAYALKRLDEVYAAYAEPDADFDA 120

Query: 121 LA 122
           LA
Sbjct: 121 LA 122


>PM0425 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains Pmu Pasteurella multocida
          Length = 556

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 105/121 (86%)

Query: 2   AQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEG 61
           +Q+V+TM+RVGKIVPPKR ILKDISLSFFPGAKIGVLGLNG+GKSTLL+IMAGIDKEIEG
Sbjct: 3   SQFVYTMHRVGKIVPPKRHILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKEIEG 62

Query: 62  EAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDAL 121
           EA P P + IGYLPQEP+LD ++TVR+ +E A+GEV  A  +LD VYA YA+ DADFD L
Sbjct: 63  EARPQPGIKIGYLPQEPKLDPQQTVREAIEEAVGEVKNALTRLDEVYALYADPDADFDKL 122

Query: 122 A 122
           A
Sbjct: 123 A 123


>yjjK [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains Eco Escherichia coli K12
          Length = 555

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 105/122 (86%)

Query: 1   MAQYVFTMNRVGKIVPPKRQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIE 60
           MAQ+V+TM+RVGK+VPPKR ILK+ISLSFFPGAKIGVLGLNG+GKSTLL+IMAGIDK+IE
Sbjct: 1   MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIE 60

Query: 61  GEAIPMPNLNIGYLPQEPQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDA 120
           GEA P P++ IGYLPQEPQL+ E TVR+ +E A+ EV  A  +LD VYA YA+ DADFD 
Sbjct: 61  GEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDK 120

Query: 121 LA 122
           LA
Sbjct: 121 LA 122