BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0301.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0279 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana... 423 e-118 BMEI1923 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melite... 407 e-113 SMb21121 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium m... 398 e-111 PA2015 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 396 e-110 AGl2707 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tu... 383 e-106 >RSc0279 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum Length = 393 Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/263 (78%), Positives = 231/263 (87%) Query: 1 MIHLPGLSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGIT 60 MI LPGL FD G DI LR AV +A +E+APRA IDRSDQFPMD WK++GDLGVLGIT Sbjct: 1 MIELPGLRFDLGVDIEMLRSAVRDWAQAELAPRAEAIDRSDQFPMDAWKQMGDLGVLGIT 60 Query: 61 VSEEYGGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRL 120 V+EEYGG+G+GYLAH+IAMEEISRASASVGLSYGAHSNLCVNQI RNG QK KYLP+L Sbjct: 61 VAEEYGGSGMGYLAHMIAMEEISRASASVGLSYGAHSNLCVNQIHRNGTPAQKAKYLPKL 120 Query: 121 ISGDFIGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDL 180 +SG++IGALAMSEPNAGSDVVSMKLRA+ +GDRYVLNG+KMWITNGPD DVLVVY KT+ Sbjct: 121 VSGEWIGALAMSEPNAGSDVVSMKLRAECRGDRYVLNGTKMWITNGPDCDVLVVYGKTEP 180 Query: 181 DVGARGMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNV 240 ++GARGMTAF+VEKG KGFSVAQKLDKLGMRGSHTGELVF + EVP ENVLG G V Sbjct: 181 ELGARGMTAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFDNVEVPAENVLGEENGGTRV 240 Query: 241 LMSGLDFERSVLSGGPLGIMQAC 263 LMSGLD+ER+VLSGGP+GIMQAC Sbjct: 241 LMSGLDYERAVLSGGPIGIMQAC 263 >BMEI1923 [I] COG1960 Acyl-CoA dehydrogenases Bme Brucella melitensis Length = 382 Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/257 (75%), Positives = 226/257 (87%) Query: 7 LSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYG 66 ++F GE+I ALR+ V FA S IAP AAE DR++QFPM LW++ G+LGVLGIT E+YG Sbjct: 1 MNFGLGEEIEALRDTVRRFAESRIAPLAAETDRNNQFPMHLWREFGELGVLGITAPEDYG 60 Query: 67 GAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFI 126 GAG+GYLAH IAMEEISRASAS+GLSYGAHSNLCVNQI RNG+ EQ+ KYLP+LISG+ + Sbjct: 61 GAGMGYLAHCIAMEEISRASASIGLSYGAHSNLCVNQITRNGSPEQRAKYLPKLISGEHV 120 Query: 127 GALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARG 186 GALAMSEP AGSDVVSMKL A+K+GDRYVLNG+KMWITNGPDADVLVVYAKTDL G RG Sbjct: 121 GALAMSEPGAGSDVVSMKLAAEKRGDRYVLNGNKMWITNGPDADVLVVYAKTDLSAGPRG 180 Query: 187 MTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLD 246 ++AF++EKG+KGFS AQKLDKLGMRGS+T ELVF+DCEVP EN+LG G+GVNVLMSGLD Sbjct: 181 ISAFIIEKGFKGFSTAQKLDKLGMRGSNTCELVFEDCEVPAENLLGTEGKGVNVLMSGLD 240 Query: 247 FERSVLSGGPLGIMQAC 263 +ER VL+GGPLGIM AC Sbjct: 241 YERVVLAGGPLGIMAAC 257 >SMb21121 [I] COG1960 Acyl-CoA dehydrogenases Sme Sinorhizobium meliloti Length = 387 Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/258 (75%), Positives = 218/258 (84%) Query: 6 GLSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEY 65 GL+F GE+I ALR +V FA IAP A + DRS+ FPM LW+++G+LG+LGIT E + Sbjct: 5 GLNFALGEEIDALRASVRRFASERIAPLADDADRSNAFPMSLWREMGELGLLGITADEAH 64 Query: 66 GGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDF 125 GGAGLGYLAH +AMEEISRASASVGLSYGAHSNLCVNQI RNG QK +YLP+LISG+ Sbjct: 65 GGAGLGYLAHCVAMEEISRASASVGLSYGAHSNLCVNQINRNGKPAQKSRYLPKLISGEH 124 Query: 126 IGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGAR 185 +GALAMSEP AGSDVVSMKL+ADK+GDRYVLNGSKMWITNGPDADVLVVYAKTD G R Sbjct: 125 VGALAMSEPGAGSDVVSMKLKADKRGDRYVLNGSKMWITNGPDADVLVVYAKTDPAAGPR 184 Query: 186 GMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGL 245 G+TAFLVEK + GFS QKLDKLGMRGS+T EL+F DCEVPEENVLGGVG GV VLMSGL Sbjct: 185 GITAFLVEKAFPGFSAGQKLDKLGMRGSNTSELIFTDCEVPEENVLGGVGEGVKVLMSGL 244 Query: 246 DFERSVLSGGPLGIMQAC 263 D+ER VLS GPLGIM AC Sbjct: 245 DYERVVLSAGPLGIMAAC 262 >PA2015 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 387 Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/259 (73%), Positives = 218/259 (84%) Query: 5 PGLSFDHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEE 64 P L+F GE I LR+ V F +E+ PRAA+ID+ +QFPMD+W+K G++G+LGITV EE Sbjct: 4 PSLNFALGETIDMLRDQVRGFVAAELQPRAAQIDQDNQFPMDMWRKFGEMGLLGITVDEE 63 Query: 65 YGGAGLGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGD 124 YGG+ LGYLAH + MEEISRASASV LSYGAHSNLCVNQIKRNGN EQK +YLP L+SG+ Sbjct: 64 YGGSALGYLAHAVVMEEISRASASVALSYGAHSNLCVNQIKRNGNAEQKARYLPALVSGE 123 Query: 125 FIGALAMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGA 184 IGALAMSEPNAGSDVVSMKLRAD+ GDR+VLNGSKMWITNGPDA V+YAKTD D GA Sbjct: 124 HIGALAMSEPNAGSDVVSMKLRADRVGDRFVLNGSKMWITNGPDAHTYVIYAKTDADKGA 183 Query: 185 RGMTAFLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSG 244 G+TAF+VE+ +KGFS KLDKLGMRGS+T EL+FQD EVPEENVLG V GV VLMSG Sbjct: 184 HGITAFIVERDWKGFSRGPKLDKLGMRGSNTCELIFQDVEVPEENVLGAVNGGVKVLMSG 243 Query: 245 LDFERSVLSGGPLGIMQAC 263 LD+ER VLSGGP+GIMQAC Sbjct: 244 LDYERVVLSGGPVGIMQAC 262 >AGl2707 [I] COG1960 Acyl-CoA dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 421 Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust. Identities = 181/254 (71%), Positives = 220/254 (86%) Query: 10 DHGEDIAALREAVAAFAHSEIAPRAAEIDRSDQFPMDLWKKLGDLGVLGITVSEEYGGAG 69 D G +IAALR++ +AFA +IAP A EIDR+D+FP LW ++G+LG+ GITVSEE+GGA Sbjct: 43 DLGPEIAALRDSASAFADDKIAPLATEIDRNDRFPRQLWPQMGELGLHGITVSEEFGGAD 102 Query: 70 LGYLAHIIAMEEISRASASVGLSYGAHSNLCVNQIKRNGNEEQKRKYLPRLISGDFIGAL 129 +GYLAH +AMEEISRASAS+GLSYGAHSNLC+NQI R G +EQK +YLP+L+SGD +G+L Sbjct: 103 MGYLAHCVAMEEISRASASIGLSYGAHSNLCINQIHRWGTDEQKHRYLPKLVSGDHVGSL 162 Query: 130 AMSEPNAGSDVVSMKLRADKKGDRYVLNGSKMWITNGPDADVLVVYAKTDLDVGARGMTA 189 AMSE AGSDVVSM+L+A++KGDRYVLNG+KMWITNG +AD LVVYAKTD+ GARG+TA Sbjct: 163 AMSETEAGSDVVSMRLKAERKGDRYVLNGAKMWITNGHEADTLVVYAKTDMSAGARGITA 222 Query: 190 FLVEKGYKGFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLDFER 249 FL+EKG+KGF AQKLDKLGMRGS T ELVF+DCEVPEEN+LG + GV VLMSGLD+ER Sbjct: 223 FLIEKGFKGFRPAQKLDKLGMRGSPTSELVFEDCEVPEENILGRLNDGVTVLMSGLDYER 282 Query: 250 SVLSGGPLGIMQAC 263 +VL+ GP+GIMQA Sbjct: 283 AVLAAGPVGIMQAA 296