BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0293.p         (172 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0070 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralst...   259   2e-69
PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudo...   210   2e-54
NMB0110 [J] COG0242 N-formylmethionyl-tRNA deformylase Nme Neiss...   208   5e-54
NMA0164 [J] COG0242 N-formylmethionyl-tRNA deformylase NmA Neiss...   208   5e-54
YPO0242 [J] COG0242 N-formylmethionyl-tRNA deformylase Ype Yersi...   188   4e-48

>RSc0070 [J] COG0242 N-formylmethionyl-tRNA deformylase Rso Ralstonia
           solanacearum
          Length = 169

 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/166 (74%), Positives = 144/166 (86%)

Query: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           MALLNIL+YPDPRLHK+A PV V D+RI+KLVADMAETMY APG+GLAATQVDVHE+V+ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           IDVS+    L+VFINPEIVWASE ++V+DEGCLSVP IYD VERP RV+VRA +  G++F
Sbjct: 61  IDVSESRDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166
           E++ D LLAVCIQHEMDHL GKVFVEYLSPLK+NRIK KL+K + E
Sbjct: 121 ELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLE 166


>PA0019 [J] COG0242 N-formylmethionyl-tRNA deformylase Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 129/166 (77%)

Query: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           MA+LNIL +PDPRL  IA PV V D+ +++L+ DM ETMY APG+GLAATQV+VH+++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D+S+D    +VFINPE    +ED   Y EGCLSVPG Y+ V+RP +V+++A D DG  F
Sbjct: 61  MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166
           E  A+ LLAVCIQHE DHL GK+FV+YLS LKR+RI+ KL+K+ R+
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166


>NMB0110 [J] COG0242 N-formylmethionyl-tRNA deformylase Nme Neisseria
           meningitidis MC58
          Length = 167

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 128/165 (77%), Gaps = 1/165 (0%)

Query: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           MALLNIL+YPD RLH +A PV   DERI+KL+ADM ETMY + G+GLAATQVDVHE+VVV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D+++D    +VFINP IV   + +  Y+EGCLSVPGIYD V R  RVKV A +  G+ F
Sbjct: 61  MDLTEDRSEPRVFINPVIV-EKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEER 165
            ++AD LLA+C+QHE+DHL G VFVE LS LK+ RIKTKL+K ++
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>NMA0164 [J] COG0242 N-formylmethionyl-tRNA deformylase NmA Neisseria
           meningitidis Z2491
          Length = 167

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 128/165 (77%), Gaps = 1/165 (0%)

Query: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           MALLNIL+YPD RLH +A PV   DERI+KL+ADM ETMY + G+GLAATQVDVHE+VVV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           +D+++D    +VFINP IV   + +  Y+EGCLSVPGIYD V R  RVKV A +  G+ F
Sbjct: 61  MDLTEDRSEPRVFINPVIV-EKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEER 165
            ++AD LLA+C+QHE+DHL G VFVE LS LK+ RIKTKL+K ++
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>YPO0242 [J] COG0242 N-formylmethionyl-tRNA deformylase Ype Yersinia pestis
          Length = 170

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60
           M++L +L YPD RL KIAAPV   +  I+++V DM ETMYA  G+GLAATQVDVH+Q++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60

Query: 61  IDVSDDGKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGKAF 120
           ID+S++     V INPE++  S +  + +EGCLS+P     V R  +VK+RA D DGK F
Sbjct: 61  IDISENRDQRLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119

Query: 121 EVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQK 162
           E++ D LLA+CIQHEMDHL GK+FV+YLSPLKR RI+ KL+K
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEK 161