BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0285.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3264_1 [R] COG2823 Predicted periplasmic or secreted lipoprot... 129 6e-30 PA4426 [R] COG2823 Predicted periplasmic or secreted lipoprotein... 120 3e-27 HI1658 [R] COG2823 Predicted periplasmic or secreted lipoprotein... 116 3e-26 STM3267 [R] COG2823 Predicted periplasmic or secreted lipoprotei... 106 4e-23 yraP [R] COG2823 Predicted periplasmic or secreted lipoprotein E... 103 4e-22 >RSc3264_1 [R] COG2823 Predicted periplasmic or secreted lipoprotein Rso Ralstonia solanacearum Length = 199 Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/189 (39%), Positives = 111/189 (58%) Query: 11 LRRPLAAVALGGMLALSLQGCFAVFAGGALATTFAATDRRTLGAQTEDKAIVVKGESRLP 70 L+R + AL G+ A L CF +FAG ATDRR QT D+ + ++ E+ L Sbjct: 11 LKRTVVLAALAGITATQLTACFPLFAGAVAGGVALATDRRPTATQTIDRGLQMEAENSLI 70 Query: 71 EVLPAGSHVNVTAFNRKVLLSGEVPDEAAKATAERETRAIQNVETVYNELAVMPASSFGS 130 +HVNVT +NRKVLL+GE DE K + + ++N V NE+ + SSFG+ Sbjct: 71 ARYSGLAHVNVTVYNRKVLLTGEARDEQVKQQISQYAQKLENAREVVNEMTIGEFSSFGA 130 Query: 131 RSSDALITSKVLASLVDDKTLYSSAFKITTERGIVYMMGRVTQREGQRAAQIASGVSDVT 190 R++D +T+KV A+L + L ++ K+TTE VY+MG VT+ EG+ A ++A V V Sbjct: 131 RTNDTYLTTKVKAALAGTEGLPWNSIKVTTEAQAVYLMGVVTESEGEHATEVARTVGGVG 190 Query: 191 KVVTLFEYI 199 KVV +F+Y+ Sbjct: 191 KVVKVFDYV 199 >PA4426 [R] COG2823 Predicted periplasmic or secreted lipoprotein Pae Pseudomonas aeruginosa Length = 192 Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 95/154 (61%), Gaps = 3/154 (1%) Query: 50 RTLGAQTEDKAIVVKGESRLPEVLPA---GSHVNVTAFNRKVLLSGEVPDEAAKATAERE 106 RT+G++ +D I K + + PA SH+ V ++N VL++G+ P K+ AE+ Sbjct: 39 RTIGSKIDDSLIETKAAVNIAKADPALDKDSHIVVVSYNGIVLIAGQTPRADLKSKAEQA 98 Query: 107 TRAIQNVETVYNELAVMPASSFGSRSSDALITSKVLASLVDDKTLYSSAFKITTERGIVY 166 R +Q V+ V+NEL V SS +R++DA IT+K+ ++ D + SS K+ TE GIVY Sbjct: 99 ARTVQKVKNVHNELQVTSPSSLLARNNDAWITTKLKTQMLSDPNVPSSRIKVVTENGIVY 158 Query: 167 MMGRVTQREGQRAAQIASGVSDVTKVVTLFEYIS 200 MMG V Q+E +A ++A GV V K+V LFEYI+ Sbjct: 159 MMGLVNQQEAAQAVRVAQGVDGVQKIVKLFEYIN 192 >HI1658 [R] COG2823 Predicted periplasmic or secreted lipoprotein Hin Haemophilus influenzae Length = 193 Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 2/188 (1%) Query: 14 PLAAVALGGMLALSLQGCFAVFAGGALATTFAATDRRTLGAQTEDKAIVVKGESRLPE-- 71 PL +A+ + LQGC A GG ATD RT G Q +D+ + K E+ + + Sbjct: 5 PLKKLAILLGATIFLQGCVAAVIGGGAVAAKVATDPRTTGTQIDDETLEFKVENAVEKDA 64 Query: 72 VLPAGSHVNVTAFNRKVLLSGEVPDEAAKATAERETRAIQNVETVYNELAVMPASSFGSR 131 + A VN ++N +VLL G+VP+ K TA + ++ V VYNEL V P SF Sbjct: 65 QIKAEGRVNAVSYNGRVLLIGQVPNSDVKDTATALAKGVEGVNEVYNELTVSPKISFAQI 124 Query: 132 SSDALITSKVLASLVDDKTLYSSAFKITTERGIVYMMGRVTQREGQRAAQIASGVSDVTK 191 S D+ +T++V + + D + ++ K+ +E G V+++G VTQ + AA IAS +S V K Sbjct: 125 SKDSWLTTQVKSKMFVDGRVKATDVKVISENGEVFLLGNVTQSQANAAADIASKISGVKK 184 Query: 192 VVTLFEYI 199 V+ +F+Y+ Sbjct: 185 VIKVFKYL 192 >STM3267 [R] COG2823 Predicted periplasmic or secreted lipoprotein Sty Salmonella typhimurium LT2 Length = 191 Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 106/189 (56%), Gaps = 7/189 (3%) Query: 14 PLAAVALGGMLALSLQGCFAVFAGGALATTF-AATDRRTLGAQTEDKAIVVKGESRLP-- 70 PLA + + AL LQGC A G A AATD R++G Q +D + ++ S L Sbjct: 6 PLAVL----ISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLELRVSSALSKD 61 Query: 71 EVLPAGSHVNVTAFNRKVLLSGEVPDEAAKATAERETRAIQNVETVYNELAVMPASSFGS 130 E + + +NVTA+ KVLL G+ P+ A A++ ++ VYNE+ G+ Sbjct: 62 EQIKKETRINVTAYQGKVLLVGQSPNSELSARAKQIAMGVEGTTEVYNEIRQGQPIGLGT 121 Query: 131 RSSDALITSKVLASLVDDKTLYSSAFKITTERGIVYMMGRVTQREGQRAAQIASGVSDVT 190 S+D IT+KV + L+ + SS K+TTE G V+++G VT+REG+ AA IAS VS V Sbjct: 122 ASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLGLVTEREGKAAADIASRVSGVK 181 Query: 191 KVVTLFEYI 199 +V T F YI Sbjct: 182 RVTTAFTYI 190 >yraP [R] COG2823 Predicted periplasmic or secreted lipoprotein Eco Escherichia coli K12 Length = 191 Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/178 (39%), Positives = 98/178 (55%), Gaps = 3/178 (1%) Query: 25 ALSLQGCFAVFAGGALATTF-AATDRRTLGAQTEDKAIVVKGESRLP--EVLPAGSHVNV 81 AL LQGC A G A AATD R++G Q +D + V+ S L E + + +NV Sbjct: 13 ALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINV 72 Query: 82 TAFNRKVLLSGEVPDEAAKATAERETRAIQNVETVYNELAVMPASSFGSRSSDALITSKV 141 TA+ KVLL G+ P+ A A++ + VYNE+ G S+D IT+KV Sbjct: 73 TAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKV 132 Query: 142 LASLVDDKTLYSSAFKITTERGIVYMMGRVTQREGQRAAQIASGVSDVTKVVTLFEYI 199 + L+ + SS K+TTE G V++MG VT+RE + AA IAS VS V +V T F +I Sbjct: 133 RSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFI 190