BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0274.p         (100 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0058 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C s...   129   1e-30
PA4482 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C su...   112   2e-25
NMA1567 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C s...   108   4e-24
NMB1355 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C s...   105   3e-23
AGc2429 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C s...    82   3e-16

>RSc0058 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Rso
           Ralstonia solanacearum
          Length = 99

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 82/100 (82%), Gaps = 1/100 (1%)

Query: 1   MSLSLSDVKRIANLSRLELTEAQADQTLEKLNGIFALVEQMKAVDTRGVEPLSHPIAAIE 60
           M+L LSDVKRIA+L+R+E+++ +A QTL +LN  F LVEQM+AVDT G+EP++HPI  ++
Sbjct: 1   MALELSDVKRIAHLARIEVSDGEAAQTLTQLNQFFTLVEQMQAVDTTGIEPMAHPIEQVQ 60

Query: 61  PALALRLREDVVTETNRRDDYQQPAPATQDGLYLVPKVIE 100
            A A RLRED VTE +RR DYQQ AP+T+ GLYLVPKVIE
Sbjct: 61  -APAQRLREDAVTEPDRRADYQQCAPSTEAGLYLVPKVIE 99


>PA4482 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Pae
           Pseudomonas aeruginosa
          Length = 96

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 5/100 (5%)

Query: 1   MSLSLSDVKRIANLSRLELTEAQADQTLEKLNGIFALVEQMKAVDTRGVEPLSHPIAAIE 60
           M+L  SDV++IA+L+RL L+EA   +T E LN I  L++QM+AVDT GVEPL+HP+ A +
Sbjct: 1   MALERSDVEKIAHLARLGLSEADLPRTTETLNNILGLIDQMQAVDTSGVEPLAHPLEATQ 60

Query: 61  PALALRLREDVVTETNRRDDYQQPAPATQDGLYLVPKVIE 100
                RLR D VTET+ RD YQ  APA ++GLYLVPKVIE
Sbjct: 61  -----RLRPDAVTETDHRDAYQTIAPAVEEGLYLVPKVIE 95


>NMA1567 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit NmA
           Neisseria meningitidis Z2491
          Length = 96

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 77/100 (77%), Gaps = 5/100 (5%)

Query: 1   MSLSLSDVKRIANLSRLELTEAQADQTLEKLNGIFALVEQMKAVDTRGVEPLSHPIAAIE 60
           M+L+L+DV +IA LSRL LT A+ +++L++LN IFA+VEQM+ ++T G+EP++HP  A  
Sbjct: 1   MALTLADVDKIARLSRLHLTAAEKEKSLQELNDIFAMVEQMQNINTDGIEPMAHPHEA-- 58

Query: 61  PALALRLREDVVTETNRRDDYQQPAPATQDGLYLVPKVIE 100
              ALRLRED VTET+R  +YQ  AP  ++ LY+VP+VIE
Sbjct: 59  ---ALRLREDEVTETDRAAEYQAVAPEVRNRLYIVPQVIE 95


>NMB1355 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Nme
           Neisseria meningitidis MC58
          Length = 96

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 75/100 (75%), Gaps = 5/100 (5%)

Query: 1   MSLSLSDVKRIANLSRLELTEAQADQTLEKLNGIFALVEQMKAVDTRGVEPLSHPIAAIE 60
           M+L+L+DV +IA LSRL LT  + +++L++LN IF +VEQM+ ++T G+EP++HP  A  
Sbjct: 1   MALTLADVDKIARLSRLHLTAEEKEKSLQELNDIFTMVEQMQTINTDGIEPMAHPHEA-- 58

Query: 61  PALALRLREDVVTETNRRDDYQQPAPATQDGLYLVPKVIE 100
              ALRLRED VTET+R  +YQ  AP  ++ LY+VP+VIE
Sbjct: 59  ---ALRLREDEVTETDRAAEYQAGAPEVRNRLYIVPQVIE 95


>AGc2429 [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 119

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 65/100 (65%), Gaps = 5/100 (5%)

Query: 1   MSLSLSDVKRIANLSRLELTEAQADQTLEKLNGIFALVEQMKAVDTRGVEPLSHPIAAIE 60
           MS+ L+ VKR+A L+R+ ++E +A   L +LNGI   VEQ+  V+  GVEP++    ++ 
Sbjct: 25  MSVDLATVKRVARLARIAVSEEEAQNMLGQLNGILGFVEQLSEVNVDGVEPMT----SVT 80

Query: 61  PALALRLREDVVTETNRRDDYQQPAPATQDGLYLVPKVIE 100
           P + ++ R DVVT+ N+ DD    APAT    ++VPKV+E
Sbjct: 81  P-VEMKKRADVVTDGNKADDIVANAPATDRDFFMVPKVVE 119