BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0272.p (186 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0057 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 304 6e-83 PA4483 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su... 246 2e-65 NMB1356 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 233 2e-61 NMA1568 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 232 3e-61 all1053 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A s... 218 5e-57 >RSc0057 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Rso Ralstonia solanacearum Length = 495 Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 149/186 (80%), Positives = 161/186 (86%), Gaps = 8/186 (4%) Query: 1 VYYVIAPAEASSNLSRFDGVRYGHRAADYGNLDDMYRKSRAEGFGEEVKRRILVGSYVLS 60 YYVIAPAEASSNLSRFDGVRYGHRAA Y +L DMYRK+RAEGFG EVKRRILVG+YVLS Sbjct: 317 TYYVIAPAEASSNLSRFDGVRYGHRAAAYRDLADMYRKTRAEGFGWEVKRRILVGTYVLS 376 Query: 61 HGYYDAYYLQAQKIRRLIAQDFQNALAGANRQCDVIMGPVSPTVAWDLGDKTNDPVANYL 120 HGYYDAYYLQAQKIRR+IAQDFQNA QCDVIMGPV+PTVAW LG+KT+DP+ YL Sbjct: 377 HGYYDAYYLQAQKIRRIIAQDFQNAFG----QCDVIMGPVAPTVAWKLGEKTDDPLQMYL 432 Query: 121 ADIFTLSTSLAGLPGMSIPCGFGQGEKNGKRPVGLQIIGNYFDEARLLNVAHQFQQATDW 180 ADIFTLSTSLAGLPGMS+P GFG NG PVGLQIIGNYF+EAR+L +AH FQQATDW Sbjct: 433 ADIFTLSTSLAGLPGMSVPAGFG---ANGL-PVGLQIIGNYFEEARMLQIAHAFQQATDW 488 Query: 181 HLREPA 186 H R PA Sbjct: 489 HTRRPA 494 >PA4483 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Pae Pseudomonas aeruginosa Length = 484 Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 117/185 (63%), Positives = 143/185 (77%), Gaps = 9/185 (4%) Query: 2 YYVIAPAEASSNLSRFDGVRYGHRAADYGNLDDMYRKSRAEGFGEEVKRRILVGSYVLSH 61 YYVIAPAEASSNLSRFDGVRYG+R NL+D+Y++SRAEGFG EVK RI+VG+Y LS Sbjct: 307 YYVIAPAEASSNLSRFDGVRYGYRCDAPQNLEDLYKRSRAEGFGSEVKNRIMVGTYALSA 366 Query: 62 GYYDAYYLQAQKIRRLIAQDFQNALAGANRQCDVIMGPVSPTVAWDLGDKTNDPVANYLA 121 GYYDAYYLQAQKIRRLI DF +A A + DVI+GP +P AW +G+K +DPV+ YL Sbjct: 367 GYYDAYYLQAQKIRRLIKNDFVSAFA----EVDVILGPTTPNPAWKIGEKNDDPVSQYLE 422 Query: 122 DIFTLSTSLAGLPGMSIPCGFGQGEKNGKRPVGLQIIGNYFDEARLLNVAHQFQQATDWH 181 DI+T++ +LAGLPG+S+P GF G PVG+Q++ YF E RLLNVAHQ+QQ +DWH Sbjct: 423 DIYTITANLAGLPGLSMPAGFVDG-----LPVGVQLLAPYFQEGRLLNVAHQYQQVSDWH 477 Query: 182 LREPA 186 R PA Sbjct: 478 TRTPA 482 >NMB1356 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Nme Neisseria meningitidis MC58 Length = 481 Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 107/184 (58%), Positives = 142/184 (77%), Gaps = 9/184 (4%) Query: 2 YYVIAPAEASSNLSRFDGVRYGHRAADYGNLDDMYRKSRAEGFGEEVKRRILVGSYVLSH 61 YYV+A AEAS+NLSR+DGVRYGHRAA + +L++MY K+RAEGFG EVKRRI++G+YVLSH Sbjct: 306 YYVLASAEASTNLSRYDGVRYGHRAAQFADLEEMYGKTRAEGFGSEVKRRIMIGTYVLSH 365 Query: 62 GYYDAYYLQAQKIRRLIAQDFQNALAGANRQCDVIMGPVSPTVAWDLGDKTNDPVANYLA 121 GYYDAYYL+AQK+RRL+A DFQ A A +CD+I+ P +PT A +G + PV YL+ Sbjct: 366 GYYDAYYLKAQKLRRLVADDFQTAFA----RCDLILAPTAPTAAPKIGADAS-PVETYLS 420 Query: 122 DIFTLSTSLAGLPGMSIPCGFGQGEKNGKRPVGLQIIGNYFDEARLLNVAHQFQQATDWH 181 DI+T++ +LAGLP +++P GF G PVG+Q++GNYF EA++L AHQ Q +DWH Sbjct: 421 DIYTIAVNLAGLPALTLPAGF----SGGGLPVGVQLVGNYFAEAKILGAAHQIQLNSDWH 476 Query: 182 LREP 185 + P Sbjct: 477 GKRP 480 >NMA1568 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases NmA Neisseria meningitidis Z2491 Length = 481 Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 106/184 (57%), Positives = 143/184 (77%), Gaps = 9/184 (4%) Query: 2 YYVIAPAEASSNLSRFDGVRYGHRAADYGNLDDMYRKSRAEGFGEEVKRRILVGSYVLSH 61 YYV+A AEAS+NLSR+DGVRYGHRAA + +L++MY K+RAEGFG EVKRRI++G+YVLSH Sbjct: 306 YYVLASAEASTNLSRYDGVRYGHRAAQFSDLEEMYGKTRAEGFGSEVKRRIMIGTYVLSH 365 Query: 62 GYYDAYYLQAQKIRRLIAQDFQNALAGANRQCDVIMGPVSPTVAWDLGDKTNDPVANYLA 121 GYYDAYYL+AQK+RRL+A DFQ A A +CD+I+ P +P+ A +G + PV YL+ Sbjct: 366 GYYDAYYLKAQKLRRLVADDFQTAFA----RCDLILAPTAPSAAPKIGADAS-PVETYLS 420 Query: 122 DIFTLSTSLAGLPGMSIPCGFGQGEKNGKRPVGLQIIGNYFDEARLLNVAHQFQQATDWH 181 DI+T++ +LAGLP +++P GF +G P+G+Q+IGNYF EA++L AHQ Q +DWH Sbjct: 421 DIYTIAVNLAGLPALTLPAGF----SSGGLPIGVQLIGNYFSEAKILGAAHQIQLNSDWH 476 Query: 182 LREP 185 + P Sbjct: 477 GKRP 480 >all1053 [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases Nos Nostoc sp. PCC 7120 Length = 486 Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 99/184 (53%), Positives = 139/184 (75%), Gaps = 8/184 (4%) Query: 2 YYVIAPAEASSNLSRFDGVRYGHRAADYGNLDDMYRKSRAEGFGEEVKRRILVGSYVLSH 61 YY+IAP+EAS+NL+R+DGV+YG RA + NL MY+++RA GFG EVKRRI++G+Y LS Sbjct: 308 YYIIAPSEASANLARYDGVKYGWRAPEGDNLLSMYKRTRATGFGAEVKRRIMIGTYALSA 367 Query: 62 GYYDAYYLQAQKIRRLIAQDFQNALAGANRQCDVIMGPVSPTVAWDLGDKTNDPVANYLA 121 GYYDAYYL+AQK+R LI QDF+NA + DV++ P +PT A+ G+KT DP++ YL Sbjct: 368 GYYDAYYLKAQKVRTLIKQDFENAF----KNVDVLVSPTAPTTAFKAGEKTADPISMYLN 423 Query: 122 DIFTLSTSLAGLPGMSIPCGFGQGEKNGKRPVGLQIIGNYFDEARLLNVAHQFQQATDWH 181 D+ T+ +LAGLPG+S+PCGF ++ G P+GLQ+IG E +LL +A+ ++Q+T WH Sbjct: 424 DLMTIPVNLAGLPGLSVPCGF---DEQG-LPIGLQLIGKVLREDQLLQIAYAYEQSTSWH 479 Query: 182 LREP 185 L +P Sbjct: 480 LSQP 483