BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0271.p (486 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0054 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B s... 710 0.0 PA4484 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B su... 613 e-175 NMB1358 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B s... 604 e-172 NMA1570 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B s... 602 e-172 AGc2438 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B s... 494 e-139 >RSc0054 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Rso Ralstonia solanacearum Length = 488 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/489 (76%), Positives = 411/489 (84%), Gaps = 5/489 (1%) Query: 1 MQWEVVIGLETHTQLSTQSKIFSGSPTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60 MQWEVVIGLETH QLST SKIFSG+ T FGA PNTQA+PVDLALPGVLPVLNKGAVERAI Sbjct: 1 MQWEVVIGLETHAQLSTASKIFSGASTAFGAAPNTQAAPVDLALPGVLPVLNKGAVERAI 60 Query: 61 QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVE-KDGKTEI-K 118 FGLAIGA IA +SIFARKNYFYPDLPKGYQISQ+EIPVVQGGT++ VE ++G+ K Sbjct: 61 TFGLAIGAKIASKSIFARKNYFYPDLPKGYQISQYEIPVVQGGTLTIQVEGRNGQPGYEK 120 Query: 119 TINLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHS 178 T+NLTRAHLEEDAGKSLHED+ GMTGIDLNRAGTPLLEIVTEP+MRSAAEAV YA+ALH+ Sbjct: 121 TVNLTRAHLEEDAGKSLHEDFAGMTGIDLNRAGTPLLEIVTEPDMRSAAEAVAYARALHA 180 Query: 179 LVMWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLDEAINYEVRRQI 238 LVMWLGICDGNMQEGSFRCDANVSVR FGTRCEIKNLNSFRFL+EAINYEVRRQI Sbjct: 181 LVMWLGICDGNMQEGSFRCDANVSVRRGPDAPFGTRCEIKNLNSFRFLEEAINYEVRRQI 240 Query: 239 ELIEDGGAVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATM 298 ELIEDGG VVQETRLYDPD+KETRSMRSKEDA DYRYFPDPDL PL I +W++ V+AT+ Sbjct: 241 ELIEDGGTVVQETRLYDPDRKETRSMRSKEDAHDYRYFPDPDLLPLMIGADWVDAVRATL 300 Query: 299 PELPAAMRERFVAEYALPEYDAMVLTQSKGMASYFEAVVAAAGKDQAKPAANWLMGDVAS 358 PELPAAM RF + Y LP YDA +LT +K A+YFEAVVAAAG AK AANW+MG+VAS Sbjct: 301 PELPAAMAARFESAYGLPRYDASILTATKATAAYFEAVVAAAGAANAKAAANWIMGEVAS 360 Query: 359 TLNREDTDIADAPVKAAQLALLLKRIADGTISNKIA-KEVFAGMWEARSDKDSLADDIIE 417 LNR +I APV QLA LL RIADGTISN A K+VF MW D AD II Sbjct: 361 NLNRAGLEIDAAPVSPVQLAGLLARIADGTISNNTAKKDVFPAMWAGEHGGD--ADAIIA 418 Query: 418 AKGLKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLT 477 KGLKQ+SDSG LE I+D+VLAAN KSV EFRAGK++A NAL+GQAMKATRGKANP+Q+ Sbjct: 419 EKGLKQMSDSGELEKIIDEVLAANAKSVEEFRAGKDKAFNALVGQAMKATRGKANPSQVN 478 Query: 478 ELLRKKLSS 486 ELL+KKL + Sbjct: 479 ELLKKKLGA 487 >PA4484 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Pae Pseudomonas aeruginosa Length = 481 Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust. Identities = 304/490 (62%), Positives = 373/490 (76%), Gaps = 13/490 (2%) Query: 1 MQWEVVIGLETHTQLSTQSKIFSGSPTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60 MQWE VIGLE H QL+TQSKIFSGS T FGA PNTQAS VDLA+PG LPVLN+ AV A Sbjct: 1 MQWETVIGLEIHAQLATQSKIFSGSSTAFGAAPNTQASLVDLAMPGTLPVLNEEAVRMAC 60 Query: 61 QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEKDGKTEIKTI 120 FGLAI A I +++FARKNYFYPDLPKGYQ SQ + P+V G + +E DG T K I Sbjct: 61 LFGLAIDARIDRQNVFARKNYFYPDLPKGYQTSQMDHPIVGKGHLDITLE-DGTT--KRI 117 Query: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180 +TRAHLEEDAGKSLHED+QGM+GIDLNRAGTPLLEIV+EP++RSA EAV Y KA+H+LV Sbjct: 118 GITRAHLEEDAGKSLHEDFQGMSGIDLNRAGTPLLEIVSEPDIRSAKEAVAYVKAIHALV 177 Query: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLDEAINYEVRRQIEL 240 +LGICDGNM EGS RCD NVSVRP GQ +FGTR EIKN+NSFRF+++AIN+E++RQIEL Sbjct: 178 RYLGICDGNMAEGSLRCDCNVSVRPKGQAEFGTRAEIKNVNSFRFIEKAINHEIQRQIEL 237 Query: 241 IEDGGAVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300 IEDGG VVQETRLYDP+K ETRSMR KE+A DYRYFP PDL P+ I E++ +++ +PE Sbjct: 238 IEDGGKVVQETRLYDPNKDETRSMRGKEEANDYRYFPCPDLLPVVIEPEYLAKLREQLPE 297 Query: 301 LPAAMRERFVAEYALPEYDAMVLTQSKGMASYFEAVVAAAGKDQAKPAANWLMGDVASTL 360 LP RERF ++Y L YDA VL+ S+ MA YFE V G AK AANW+M ++ S L Sbjct: 298 LPVQKRERFESQYGLSAYDASVLSASREMADYFEKVQGICG--DAKLAANWVMVELGSLL 355 Query: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFAGMWEARSDKDSLADDIIEAKG 420 N++ +I +PV A QL ++ RI D TIS K+AK VF EA ++ + AD IIEAKG Sbjct: 356 NKDGLEIEQSPVSAEQLGGMILRIKDNTISGKLAKMVF----EAMANGEGSADQIIEAKG 411 Query: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKE----QAINALIGQAMKATRGKANPAQL 476 LKQ++DSGA+E ++D+VLAAN + V ++RA E + +GQAMKA++GKANP Q+ Sbjct: 412 LKQVTDSGAIEKMLDEVLAANAEQVEQYRAADEAKRGKMFGFFVGQAMKASKGKANPQQV 471 Query: 477 TELLRKKLSS 486 ELL+KKL + Sbjct: 472 NELLKKKLEA 481 >NMB1358 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Nme Neisseria meningitidis MC58 Length = 476 Score = 604 bits (1558), Expect = e-172, Method: Compositional matrix adjust. Identities = 296/485 (61%), Positives = 378/485 (77%), Gaps = 9/485 (1%) Query: 1 MQWEVVIGLETHTQLSTQSKIFSGSPTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60 M WE VIGLE H QL+T+SKIFSG+ T FGAEPN AS V+ ALPGVLPV+N+ VE+AI Sbjct: 1 MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHASVVECALPGVLPVMNREVVEKAI 60 Query: 61 QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEKDGKTEIKTI 120 + GLA+ A I +++F RKNYFYPDLPKGYQISQ ++P+V+ G + V D +KTI Sbjct: 61 KLGLALDAKINQKNVFDRKNYFYPDLPKGYQISQLDLPIVEHGKLEIVVGDD----VKTI 116 Query: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180 N+TRAH+EEDAGKS+HE G TGIDLNRAGTPLLE+V+EPEMRSAAEAV YAKALHSLV Sbjct: 117 NVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPEMRSAAEAVAYAKALHSLV 176 Query: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLDEAINYEVRRQIEL 240 WL ICDGNM EGSFR DANVSVRP GQE+FGTR EIKNLNSFRFL++AINYE QIE+ Sbjct: 177 TWLDICDGNMAEGSFRVDANVSVRPKGQEEFGTRREIKNLNSFRFLEQAINYEAEAQIEI 236 Query: 241 IEDGGAVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300 +EDGG V Q T L+DP+K ETR MR KEDA DYRYFPDPDL P+ IS +++ KA MPE Sbjct: 237 LEDGGKVQQATMLFDPEKGETRVMRLKEDAHDYRYFPDPDLLPVIISDAQMQKAKAEMPE 296 Query: 301 LPAAMRERFVAEYALPEYDAMVLTQSKGMASYFEAVVAAAGKDQAKPAANWLMGDVASTL 360 LP M RFVA+Y + EYDA +LT S+ A+YFE +G Q K ANW+ G++A+ L Sbjct: 297 LPKEMAARFVADYGVSEYDARLLTASRAQAAYFEEAAKESG--QGKLTANWMNGELAAAL 354 Query: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFAGMWEARSDKDSLADDIIEAKG 420 N+E ++AD+P+ A +LA L+ +IADGT+S+K+AK+ F MW ++ ++ +IIE G Sbjct: 355 NKEGMELADSPITAPRLAALVGKIADGTLSSKLAKKAFEAMW---AEPEATIAEIIEKHG 411 Query: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL 480 L+Q++D+G +EA+VD+VLA N K+V +F++G E+A+NA++GQ MKA++GKANPAQ+ EL+ Sbjct: 412 LQQMTDTGEIEAMVDEVLANNAKAVEQFKSGNEKALNAIVGQVMKASKGKANPAQVQELI 471 Query: 481 RKKLS 485 + KL+ Sbjct: 472 KAKLA 476 >NMA1570 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) NmA Neisseria meningitidis Z2491 Length = 476 Score = 602 bits (1551), Expect = e-172, Method: Compositional matrix adjust. Identities = 295/485 (60%), Positives = 379/485 (78%), Gaps = 9/485 (1%) Query: 1 MQWEVVIGLETHTQLSTQSKIFSGSPTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAI 60 M WE VIGLE H QL+T+SKIFSG+ T FGAEPN A V+ ALPGVLPV+N+ VE+AI Sbjct: 1 MTWETVIGLEIHVQLNTKSKIFSGASTAFGAEPNAHAGVVECALPGVLPVMNREVVEKAI 60 Query: 61 QFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAVEKDGKTEIKTI 120 + GLA+ A I +++F RKNYFYPDLPKGYQISQ ++P+V+ G + V D +KTI Sbjct: 61 KLGLALDAKINRKNVFDRKNYFYPDLPKGYQISQLDLPIVEHGKLEIVVGDD----VKTI 116 Query: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180 N+TRAH+EEDAGKS+HE G TGIDLNRAGTPLLE+V+EPEMRSAAEAV YAKALHSLV Sbjct: 117 NVTRAHMEEDAGKSVHEGLNGATGIDLNRAGTPLLEVVSEPEMRSAAEAVAYAKALHSLV 176 Query: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLDEAINYEVRRQIEL 240 WL ICDGNM EGSFR DANVSVRP GQ +FGTR EIKNLNSFRFL++AINYE QIE+ Sbjct: 177 TWLNICDGNMAEGSFRVDANVSVRPKGQAEFGTRREIKNLNSFRFLEQAINYEAEAQIEI 236 Query: 241 IEDGGAVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300 +EDGG V Q T L+DP+K ETR MR KEDA DYRYFPDPDL P+ IS + +++ KA MPE Sbjct: 237 LEDGGKVQQATMLFDPEKGETRVMRLKEDAHDYRYFPDPDLLPVIISDDRLQKAKAEMPE 296 Query: 301 LPAAMRERFVAEYALPEYDAMVLTQSKGMASYFEAVVAAAGKDQAKPAANWLMGDVASTL 360 LP M RFVA+Y + +YDA +LT S+ A+YFE +G Q K ANW+ G++A+TL Sbjct: 297 LPKEMAARFVADYGVSDYDARLLTASRVQAAYFEEAAKESG--QGKLTANWMNGELAATL 354 Query: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFAGMWEARSDKDSLADDIIEAKG 420 N+E ++AD+P+ A +LA L+ +IADGT+S+K+AK+ F MW ++ ++ +IIE G Sbjct: 355 NKEGMELADSPITAPRLAALVGKIADGTLSSKLAKKAFEAMW---AEPEASIAEIIEKHG 411 Query: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL 480 L+Q++D+GA+EA+VD+VLA N K+V +F++G E+A+NA++GQ MKA++GKANPAQ+ EL+ Sbjct: 412 LQQMTDTGAIEAMVDEVLANNAKAVEQFKSGNEKALNAIVGQVMKASKGKANPAQVQELI 471 Query: 481 RKKLS 485 + KL+ Sbjct: 472 KAKLA 476 >AGc2438 [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 524 Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust. Identities = 250/484 (51%), Positives = 333/484 (68%), Gaps = 11/484 (2%) Query: 3 WEVVIGLETHTQLSTQSKIFSGSPTRFGAEPNTQASPVDLALPGVLPVLNKGAVERAIQF 62 WE+VIGLE H Q+ + SK+FSG+ T FG PN+ S VD A+PG+LPV+N+ V++A++ Sbjct: 45 WEIVIGLEVHAQVLSNSKLFSGASTTFGNAPNSNVSLVDAAMPGMLPVINEECVKQAVRT 104 Query: 63 GLAIGATIAPRSIFARKNYFYPDLPKGYQISQFEIPVVQGGTMSFAV--EKDGKTEIKTI 120 GL + A I RSIF RKNYFYPDLP+GYQISQF+ P+V GT++ ++ ++ G E I Sbjct: 105 GLGLKAKINNRSIFDRKNYFYPDLPQGYQISQFKDPIVGEGTITISLGPDRQGNFEDIEI 164 Query: 121 NLTRAHLEEDAGKSLHEDYQGMTGIDLNRAGTPLLEIVTEPEMRSAAEAVGYAKALHSLV 180 + R HLE+DAGKS+H+ + M+ +DLNR+G L+EIV++P+MRS+ EA GY L S+V Sbjct: 165 GIERLHLEQDAGKSMHDQHPTMSFVDLNRSGVALMEIVSKPDMRSSDEAKGYLTKLRSIV 224 Query: 181 MWLGICDGNMQEGSFRCDANVSVRPVGQEKFGTRCEIKNLNSFRFLDEAINYEVRRQIEL 240 +LG CDGNM EGS R D NVSVR G E FGTRCEIKN+NS RF+ +AI YE RRQ+ + Sbjct: 225 RYLGTCDGNMDEGSMRADVNVSVRRPG-EGFGTRCEIKNVNSIRFVGQAIEYEARRQVAI 283 Query: 241 IEDGGAVVQETRLYDPDKKETRSMRSKEDAQDYRYFPDPDLPPLAISQEWIERVKATMPE 300 +EDGG + QETRL+DP K ETRSMRSKEDA DYRYFPDPDL PL ++E +K +PE Sbjct: 284 LEDGGVIDQETRLFDPGKGETRSMRSKEDAHDYRYFPDPDLLPLEFDDAFVEALKVDLPE 343 Query: 301 LPAAMRERFVAEYALPEYDAMVLTQSKGMASYFEAVVAAAGKDQAKPAANWLMGDVASTL 360 LP + RFVA+ L YDA +L K +A Y+EAV AAG+D AK AANW++ D+ L Sbjct: 344 LPDDKKARFVADLGLSVYDASILVSEKAIADYYEAV--AAGRD-AKTAANWVINDLLGAL 400 Query: 361 NREDTDIADAPVKAAQLALLLKRIADGTISNKIAKEVFAGMWEARSDKDSLADDIIEAKG 420 N+ DI PV QL ++ I TIS KIAK++F +W + +I+EA+G Sbjct: 401 NKFGKDIETTPVSPDQLGGIIDLIKAETISGKIAKDLFEIVWNEGGN----PAEIVEARG 456 Query: 421 LKQISDSGALEAIVDQVLAANEKSVAEFRAGKEQAINALIGQAMKATRGKANPAQLTELL 480 +KQ++D+GA+E VD ++AAN V + +A K +GQ MKAT GKANP + L+ Sbjct: 457 MKQVTDTGAIEKAVDDIIAANPDQVEKVKA-KPTLAGWFVGQVMKATGGKANPQAVQALV 515 Query: 481 RKKL 484 + KL Sbjct: 516 KAKL 519