BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0257.p (472 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1057 [KE] COG1167 Transcriptional regulators containing a DNA... 412 e-115 BMEI0169 [KE] COG1167 Transcriptional regulators containing a DN... 332 1e-90 PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-... 322 1e-87 RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA... 319 1e-86 AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-... 303 7e-82 >RSp1057 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 471 Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust. Identities = 219/468 (46%), Positives = 291/468 (62%), Gaps = 11/468 (2%) Query: 9 LQLDLKRKTSAR-LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQ 67 +QL+L R LV+Q+ G+ ++ L G RLPSVR+ AQ H I + TV EAY + Sbjct: 5 MQLELDPLHPQRTLVDQIVQGIRAAVDNHSLPPGTRLPSVRKLAQAHGISTFTVAEAYTR 64 Query: 68 LVARGMLQARRGAGFFVAARAGQSGQHAVFVPPE---PVIDSAWLLSEMFADERVPIKAG 124 L A G + AR +G+ VAARA V V P P +++AWLLS++FAD + IK G Sbjct: 65 LAALGAIVARPRSGYLVAARAPV---QPVPVAPRWEPPALNAAWLLSDVFADRSIAIKPG 121 Query: 125 CGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQ 184 CGWLP WL++ G+ +A R + R + GYGHP+GYAPL + + Q L L + Q Sbjct: 122 CGWLPNDWLDERGVQEAMRMVSRVSALRVAGYGHPWGYAPLGEYVAQSLALRGLPVERAQ 181 Query: 185 VLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDV 244 VL T GATQALDL++RT+ + GD V ++DP YCN++ +L+LAGL V+GVPRTP G+DT Sbjct: 182 VLLTSGATQALDLIVRTLFKAGDVVAVEDPVYCNVLQVLKLAGLRVVGVPRTPEGLDTAA 241 Query: 245 LETLAR---THHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQ 301 LET+ R P+ F ++VLQNPTG+S T A RVLQ AE+HG W+VEDD+ REL Sbjct: 242 LETVLRQDEASRPRALFVSTVLQNPTGSSMTAQNAYRVLQLAEQHGLWIVEDDLHRELAD 301 Query: 302 ATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINE 361 PMLAALDGL+R +YV +SKTI+PSLR GY+ + R++ TKM + LT+SEI E Sbjct: 302 PAAPMLAALDGLRRTLYVSGFSKTISPSLRAGYVVADAAITRELARTKMAVALTSSEITE 361 Query: 362 RLVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCEL 421 R+VH +T + HV LNA L +A A + A + E G F G+F WA + G Sbjct: 362 RIVHAFVTRPAYAEHVARLNARLGAAHAGVEATMREHGAVVFDTPGRGLFLWARLPG-HA 420 Query: 422 SAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 469 A +ADRA + IWLAPG +F RFNV Y+ P L+DFL Sbjct: 421 DASALADRAIRGNIWLAPGQYFRPDDAASPWLRFNVAYSGDPALWDFL 468 >BMEI0169 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Bme Brucella melitensis Length = 484 Score = 332 bits (851), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 178/451 (39%), Positives = 262/451 (58%), Gaps = 2/451 (0%) Query: 21 LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGA 80 LVE+V + G I L G RLPS+R+ A+ ++ STVVEAY++LVA G++Q+RRGA Sbjct: 27 LVEKVMGIIRGRITAMSLAPGARLPSIRRLAETMNVSKSTVVEAYDRLVAEGIIQSRRGA 86 Query: 81 GFFVAARAGQSGQHAVFVP-PEPVIDSAWLLSEMFADERVPIKAGCGWLPGKWLNDEGLH 139 GF+V+ RA Q A P + ID W++ + E +K GCGWLP WL E L Sbjct: 87 GFYVSERARQPFSLAATAPHKDRQIDPFWVMRQSLEAESRTLKPGCGWLPDGWLPQEALR 146 Query: 140 QAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVI 199 +A R I R + YG P G+ PLRQ + LG +++ ++L T TQA+DL+ Sbjct: 147 RALRTIARDDQSNLTTYGEPLGFRPLRQHLAHRLGEQGIDIAGGEILLTDSGTQAIDLIC 206 Query: 200 RTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPKMFFT 259 R + QPGDTVL+DDP Y N A+L + ++GVP T G D D A H PK++ + Sbjct: 207 RYLLQPGDTVLVDDPCYFNFQAVLLTHRVKLVGVPYTHSGPDLDAFANAATEHAPKLYIS 266 Query: 260 TSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQATDPMLAALDGLQRVIYV 319 + L NPTG TPA A R+L+ AE HG +VED+IF + + P+LA LDG +RV+++ Sbjct: 267 NAGLHNPTGGIMTPATAHRLLKLAEAHGITLVEDNIFGDFHPSPTPLLAELDGFERVLHI 326 Query: 320 GSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHVQT 379 GS+SKT++ + RVGYIA +R+ + K+ + + ++ ++VH +L +G +RRH+++ Sbjct: 327 GSFSKTLSAAARVGYIAGRRDWIEGLTDLKLATSFGCNALSPQIVHALLIDGTYRRHIES 386 Query: 380 LNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCELSAREIADRARQKGIWLAP 439 L L A +L GL +T +GGMF WA + + + +A A +KG+ LAP Sbjct: 387 LRTRLADAMTLTANRLKATGLDLWTKPQGGMFLWARLPDG-MDSGPVARHALEKGVVLAP 445 Query: 440 GDFFHLSAPHKTSFRFNVGYADVPELFDFLR 470 G+ F S RFNV + P ++ LR Sbjct: 446 GNVFSPSCTAAGFLRFNVAQSADPYIYAVLR 476 >PA5283 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Pae Pseudomonas aeruginosa Length = 458 Score = 322 bits (825), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 180/469 (38%), Positives = 255/469 (54%), Gaps = 17/469 (3%) Query: 9 LQLDLKRKTSARLVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQL 68 + L + R S LV+Q+ G++G I +R+G R+PS+RQ A+ + + S+V+EAY++L Sbjct: 1 MHLRIDRNASEPLVQQIVAGVSGWIRGNRVRAGTRIPSIRQLARENQLSQSSVIEAYDRL 60 Query: 69 VARGMLQARRGAGFFVAARAGQSGQHAVFVPPEPVIDSAWLLSE-----MFADERVPIKA 123 VA GML++R G+GFFVA + +DS W F+ +K Sbjct: 61 VALGMLESRHGSGFFVAEAPAATTD----------LDSEWHEGAENAWGQFSGSSTKLKL 110 Query: 124 GCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIE 183 GCGW+P W E L A R++ RS A Y P G LRQ I + L + + E Sbjct: 111 GCGWIPDSWREVEELSYAIRQVARSELAGLFDYSTPLGLPALRQHIQKRLRLIDIHVDPE 170 Query: 184 QVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTD 243 Q+LTT GA+ ALDL++RT+ +PGD V++++PGY NL +L+ G+ ++GVPRT G DT Sbjct: 171 QILTTTGASHALDLLVRTLLKPGDVVVVENPGYYNLFNLLKFHGVKMLGVPRTRHGPDTA 230 Query: 244 VLETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQAT 303 LET+ R H PK FT S+ NPTGTS +P+ A RVLQ AE+H F +VEDDI+ + Sbjct: 231 ALETILRAHKPKFLFTNSMYHNPTGTSLSPSVAHRVLQLAEQHDFHIVEDDIYADFQNGP 290 Query: 304 DPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERL 363 LA LD L+RVIY+ S+SKT++ SLRVGY+ EL R++ KM ++ + E + Sbjct: 291 STRLATLDSLRRVIYLASFSKTLSCSLRVGYLIAGPELIRRLADVKMYTSIGSQRFAECV 350 Query: 364 VHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCELSA 423 V +L G +R+ VQ L L A L + G F GGMF WA I + Sbjct: 351 VSTMLANGSYRKLVQRLRQRLTRQMAATLRVLGDNGWEVFAEPVGGMFVWARIGDYPFA- 409 Query: 424 REIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFLRGL 472 E+ A + + L+PG F R N+ YA P F Sbjct: 410 -ELQAVATRLDVLLSPGSGFSPEGEESDWLRINIAYASDPRALAFFEAF 457 >RSc0989 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Rso Ralstonia solanacearum Length = 490 Score = 319 bits (817), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 187/452 (41%), Positives = 256/452 (56%), Gaps = 6/452 (1%) Query: 21 LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGA 80 LV+Q+ I+ R+G R+PS+RQ AQ I TVVEAYE+LVA+G L++RRG+ Sbjct: 35 LVDQLTEWARMRIDERVFRAGMRMPSIRQLAQEKSISRFTVVEAYERLVAQGYLESRRGS 94 Query: 81 GFFVAARAGQSGQHAVFVPPEP-VIDSAWLLSEMFADERVPIKAGCGWLPGKWLNDEGLH 139 GF+V R + P ID AWLL MF G G+LP WL+ E + Sbjct: 95 GFYVKERQAPLPEEPPAPPASARKIDVAWLLRNMFHSAEPRKAPGIGFLPNGWLDGELIA 154 Query: 140 QAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVI 199 A R + R G Q + +G P G+ PLRQ + L + +Q++ T G TQ+LDL+ Sbjct: 155 NALRALGRQNGNQFLAWGTPQGFLPLRQQLQTRLAELEIGARPDQIVMTSGITQSLDLIA 214 Query: 200 RTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPKMFFT 259 R QPGDTVL+ DP + + G VIGVP T G D LE L + PK+ Sbjct: 215 RQYVQPGDTVLVGDPAWFLMFGRFAAQGAQVIGVPYTTEGPDLVALEGLVQVRRPKLLVI 274 Query: 260 TSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFRELGQATDPM--LAALDGLQRVI 317 SVL NPTGTS + A A ++L+ AE++GF +VEDDI+ +L P LA+LD L+RVI Sbjct: 275 NSVLHNPTGTSLSAAKAFQLLRLAEQYGFLIVEDDIYGDLAPPGHPATRLASLDQLRRVI 334 Query: 318 YVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHV 377 Y+GS+SKT+A +LRVG+IAC ELA+ + K++ L EINER+++ VLTEG +R+HV Sbjct: 335 YLGSFSKTLAANLRVGFIACHPELAKNLTDGKLLAGLATPEINERVLYKVLTEGQYRKHV 394 Query: 378 QTLNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCELSAREIADRARQKGIWL 437 + + A L A+ + L +GL F GMF WA G + +A IA ++G Sbjct: 395 ERVRARLDRARDGVQRSLERLGLKLFAQQGAGMFIWADT-GRDTNA--IARAGHEEGYVF 451 Query: 438 APGDFFHLSAPHKTSFRFNVGYADVPELFDFL 469 APG F S T RFN+ + PE+ FL Sbjct: 452 APGSLFSPSQMPSTWMRFNIATSTDPEMLRFL 483 >AGc398 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 449 Score = 303 bits (775), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 161/438 (36%), Positives = 239/438 (54%), Gaps = 3/438 (0%) Query: 33 IETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGAGFFVAARAGQSG 92 I + L G RLPSVR A+ + +ST+VEAY++LVA G + +R G+GFFVA Sbjct: 9 ITSRSLVPGARLPSVRALAKTMQLSTSTIVEAYDRLVADGTISSRPGSGFFVAGPLAPLS 68 Query: 93 QHAVFVPPEPVIDSAWLLSEMFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQ 152 + + +D W+ + D K GCGWLP W+ E L +A R + R+ A Sbjct: 69 LADIEPRLDRAVDPLWVSRQALDDGSALAKPGCGWLPASWMPQEALRRAMRGLARADDAL 128 Query: 153 QVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVIRTMTQPGDTVLID 212 YG P G PLRQL+++ L ++ G Q++ T TQA+DL+ R + QPGDTV++D Sbjct: 129 LTDYGSPMGLLPLRQLLSRRLAEHGVQAGASQIMLTDSGTQAIDLLCRFLLQPGDTVVVD 188 Query: 213 DPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPKMFFTTSVLQNPTGTSYT 272 DP Y N A+LR + ++GVP TP G D + E + H P+++ T S + NPTG + Sbjct: 189 DPCYFNFHALLRAHRVKIVGVPYTPAGPDLPLFEQALKEHQPRLYITNSAIHNPTGARLS 248 Query: 273 PACAMRVLQAAERHGFWVVEDDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRV 332 A R+L AE+ G ++EDDIF + P LAA DGL RV+ +GS+SKT++ S+R Sbjct: 249 AVSAHRLLMLAEQPGLTIIEDDIFADFETQAAPRLAAFDGLNRVVQIGSFSKTLSASVRC 308 Query: 333 GYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHVQTLNATLLSAQATLN 392 G+IA R + K+ + + LV ++LT+G +R+HV+ L L +A Sbjct: 309 GFIAAPRAWVEALTDLKIATAFGGTHFSAALVLSLLTDGSYRKHVEALRQRLAAAVPEAA 368 Query: 393 AKLSEVGLTPFTAARGGMFSWATI-EGCELSAREIADRARQKGIWLAPGDFFHLSAPHKT 451 +L +G P+ + GMF W + EG + A ++A RA + + LAPG+ F S Sbjct: 369 TRLRSIGCMPWIEPQAGMFLWCRLPEGTD--AADVAQRALARQVVLAPGNVFSSSQNASG 426 Query: 452 SFRFNVGYADVPELFDFL 469 RFNV P++ L Sbjct: 427 FMRFNVSQMVGPQVMTVL 444