BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0242.p         (186 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1569 [K] COG2771 DNA-binding HTH domain-containing proteins R...   224   1e-58

>RSc1569 [K] COG2771 DNA-binding HTH domain-containing proteins Rso
           Ralstonia solanacearum
          Length = 181

 Score =  224 bits (570), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/177 (58%), Positives = 135/177 (76%)

Query: 7   IDFEQVFMHAPIGMCVSHNRVIQQANLAMAAMFGYEVEALRQTSFQEIYPTADEFERTGL 66
           +D++  F  AP+GM +S  RV+   N   A +FG+   A+   SF+ +YPT DE+ERTG 
Sbjct: 4   LDYQTAFQLAPVGMVMSRERVMVDVNEEAARIFGHPRTAMIGQSFELLYPTHDEYERTGA 63

Query: 67  RLVPILNEKGFYSDERIMKRSNDEMFWCHVTGHALNRDNPHAAGIWTFEDVSAKRPIAPG 126
           R+VPI+N +G YSDERIMKR+N E+FWCHVTG AL+R  P   GIWTFED+SA RP+   
Sbjct: 64  RIVPIMNARGSYSDERIMKRANGELFWCHVTGRALDRTRPLGEGIWTFEDLSAHRPVTAA 123

Query: 127 LTPREREIAALLVEGKTSKLIARQVELSPRTVEMHRARLMRKFAAATSSELVHKLLS 183
           LTPRER+IAA LVEGKTSK I +Q+++SPRTVE++RARLM+K+AA+TS ELV +L+ 
Sbjct: 124 LTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAASTSLELVQRLMG 180