BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0237.p (491 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll9509 [T] COG3706 Response regulator containing a CheY-like re... 156 1e-37 RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum 152 1e-36 RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum 146 1e-34 RSp1524_1 Non COG 144 4e-34 RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum 141 4e-33 >mll9509 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Mlo Mesorhizobium loti Length = 354 Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/181 (49%), Positives = 114/181 (62%), Gaps = 4/181 (2%) Query: 305 VRQELRRRVTAERQLEALARTDGLTGLLNRRALDEALQATWERCQRNLGASFSVLFIDVD 364 +R+ R+ ++A +LE L R DGLTGL NRR DE L A W+R R + S+L ID D Sbjct: 171 LRESQRQLISANLELERLTRIDGLTGLGNRRYFDEYLAAEWKRAFR-AQSPLSLLMIDAD 229 Query: 365 YFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMA 424 FK YNDTYGH GD VLK++A + + R TD A RYGGEEFV++L T L+ + +A Sbjct: 230 NFKRYNDTYGHMAGDEVLKQIARVIHSGSGRSTDLAARYGGEEFVIVLVDTLLEESSAIA 289 Query: 425 QRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAALYRAKREGRNA 484 ++L VRE +I H VTISVGVAT + + D +NAAD AL+RAK EGRN Sbjct: 290 EQLVQGVRELNIPHGPD---RVTISVGVATTVPNENETPNDFVNAADLALFRAKSEGRNR 346 Query: 485 V 485 V Sbjct: 347 V 347 >RSp0400_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 206 Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/189 (47%), Positives = 110/189 (58%), Gaps = 8/189 (4%) Query: 307 QELRRRVTAERQLEALARTDGLTGLLNRRALDEALQATWERCQRNLGASFSVLFIDVDYF 366 ++L +R+ A R+ LA TD LTGL NRRALD L W+R R SVL IDVD F Sbjct: 2 KQLEKRLAAGRRHAELAITDALTGLPNRRALDAFLDKEWKRALRERW-PVSVLMIDVDAF 60 Query: 367 KAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMAQR 426 K YND YGH GDT LK VA + A R D A RYGGEEF ++L TDL+GA +A+ Sbjct: 61 KPYNDHYGHLGGDTALKAVARCIQAHASRSGDLAARYGGEEFCIVLPHTDLEGAIAVAEH 120 Query: 427 LCDAVRERHIAHTSSPLAVVTISVGVAT----LERDHHRRVEDVLNAADAALYRAKREGR 482 + AV HI H P ++++S+G AT L D R E + AAD LYRAK +GR Sbjct: 121 IRQAVLALHIPHAQGPAGILSVSIGAATDTPALSGD---RAETLTQAADTQLYRAKTQGR 177 Query: 483 NAVRVSGME 491 N +G E Sbjct: 178 NRTMPTGAE 186 >RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 190 Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/179 (50%), Positives = 109/179 (60%), Gaps = 3/179 (1%) Query: 309 LRRRVTAERQLEALARTDGLTGLLNRRALDEALQATWERCQRNLGASFSVLFIDVDYFKA 368 LRRR+ AE++L LA TDGLTGL RRALD AL+A W+R R G +VL IDVD FK Sbjct: 1 LRRRMEAEQKLAWLANTDGLTGLGTRRALDAALEAEWQRANRQ-GRPLAVLMIDVDEFKH 59 Query: 369 YNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMAQRLC 428 YND YGH GDTVL+ VA + + R D AGRYGGEEF VLL TDL GAQ +A+ + Sbjct: 60 YNDRYGHAAGDTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPDTDLAGAQRVAEIIR 119 Query: 429 DAVRERHIAHTSSPLAVVTISVGVATLE--RDHHRRVEDVLNAADAALYRAKREGRNAV 485 V + S +T+S+GVA + D +L+ AD LY AK GRNAV Sbjct: 120 ATVLAAGEPNAGSAHGRLTVSIGVAAHDGRGDTGTTPARLLHHADLQLYEAKSGGRNAV 178 >RSp1524_1 Non COG Length = 315 Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 148/299 (49%), Gaps = 28/299 (9%) Query: 10 AIAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNREMLSLSLDTLAYRFQ 69 A+A L V+ +LY+ A +A NV+L+ QR I+RN E+ LS+ + + Sbjct: 27 AVATLTVL-----SLYEMRMDALARARDSADNVSLILQRDIARNLEVYELSMQAVIDGVR 81 Query: 70 HPLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRGKGAP----HYAD 125 P + L R LF +TN + + V +A G V + SR P H D Sbjct: 82 DP-AILALPPTIRQLVLFDRSTNAQDLGSLLVTNAAGDVIIDSR-----SVPPRRIHIGD 135 Query: 126 RAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYFRE 185 R YF + S GLY+S+P + + +S+RL+ DG+F G+VV L L YFR Sbjct: 136 RDYFKIQQQSADAGLYLSKPFMPRINGVETSIGISQRLNGPDGTFNGIVVGTLRLNYFRR 195 Query: 186 LFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDVSQTGNFQRLRAMLSEEEGSFFAH 245 LF+G++LG+ I+L +G MR PY +IG D+S + FQ + GS Sbjct: 196 LFDGVSLGEHAAITLVRTDGTLLMRRPYDAHLIGSDLSASPAFQMRK---DAPAGSLIVT 252 Query: 246 ATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFY----------AVLVSLAIF 294 DGV RL+++RRI PLI+ VG A + I+ WR+ + AVL+ ++I Sbjct: 253 GAIDGVERLFSYRRIGDYPLILSVGLALDDIYAEWRQRAWWIGGIVLLLDAVLIGMSIL 311 >RSp0398_2 [T] COG2199 FOG Rso Ralstonia solanacearum Length = 177 Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/174 (47%), Positives = 101/174 (58%), Gaps = 3/174 (1%) Query: 312 RVTAERQLEALARTDGLTGLLNRRALDEALQATWERCQRNLGASFSVLFIDVDYFKAYND 371 R+ +R+ LA TD LTGL NRRALDE L A W R R SVL IDVD+FKAYND Sbjct: 1 RIEEQRRHAELAATDALTGLANRRALDERLDAEWRRAARER-QPLSVLMIDVDHFKAYND 59 Query: 372 TYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMAQRLCDAV 431 YGH GD L+ VA + A L R D A RYGGEEF V+L +DL A ++A+ + A+ Sbjct: 60 HYGHPDGDAALQAVARCIQANLRRPGDLAARYGGEEFCVVLPGSDLDSANVVAETIRRAI 119 Query: 432 RERHIAHTSSPLAVVTISVGVA--TLERDHHRRVEDVLNAADAALYRAKREGRN 483 +I H S +T+S+G A T R + AADA LYRAK GRN Sbjct: 120 LVLNIPHARSASTALTVSIGAASGTPASSGEPRAATLTKAADAQLYRAKTSGRN 173