BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0218.p (292 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4734 [S] COG3662 Uncharacterized protein conserved in bacteria... 349 5e-96 RSp1255 [S] COG3662 Uncharacterized protein conserved in bacteri... 285 1e-76 CC2570 Non COG 140 4e-33 MT0848 [S] COG3662 Uncharacterized protein conserved in bacteria... 67 6e-11 Rv0826 [S] COG3662 Uncharacterized protein conserved in bacteria... 66 7e-11 >PA4734 [S] COG3662 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 293 Score = 349 bits (895), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 174/291 (59%), Positives = 219/291 (75%), Gaps = 2/291 (0%) Query: 1 MEFLRQRIEATVLSIS-RGPGSADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALL 59 ME +R+ IE+ VLS++ G DF P GDPGLFGPD+A W+VH DF++M+ GG+ ALL Sbjct: 1 MESVRRHIESQVLSLTGLAVGGVDFESPKGDPGLFGPDAACWKVHGDFSSMMIGGIGALL 60 Query: 60 LQMLHPLPLAGVWDHSNFQADMLGRLRRTAQFVAGTTFGSRADAERLIARVKQIHLGVNG 119 LQMLHPL LAGVWDHSNF+ D+LGRLRRT QF++ TT+G ADAERLI RV++IH V G Sbjct: 61 LQMLHPLALAGVWDHSNFRDDLLGRLRRTGQFISATTYGPLADAERLIERVRRIHESVIG 120 Query: 120 VAADGRAYAASDPDLLTWVHVAEVHCFLQGYLRYRHPAFPAARQDQYFDEIAGVAEALGA 179 DG Y+ASDPDLLTWVHVAEV FL+ YLRY +P P + QD+Y+ EIA VAE LGA Sbjct: 121 QLPDGTPYSASDPDLLTWVHVAEVSSFLKSYLRYLNPDLPGSEQDRYYSEIALVAERLGA 180 Query: 180 RAVPRSSAAIASYIDGMRPQLRCDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLP 239 RAVPR IA+Y++ MRP+LRCDERTR+ ++++ NAPAP+ +A+P+ LM+R G +LLP Sbjct: 181 RAVPRDRQQIAAYLEAMRPRLRCDERTREVVRILFNAPAPSTLARPFGALMLRAGAELLP 240 Query: 240 PWAQQMLGVPPRPPWRRALLQHSVLLAAQPLRWAMRNGSLHLARRRMGLPP 290 WA ML +P P RR L++ SV + LRWA+RN S+H A RRMGLPP Sbjct: 241 EWAGSMLDLPFSPLQRR-LIRGSVRRSVPLLRWAVRNASMHRACRRMGLPP 290 >RSp1255 [S] COG3662 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 298 Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 148/278 (53%), Positives = 190/278 (68%), Gaps = 3/278 (1%) Query: 4 LRQRIEATVLSISRGPG--SADFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLLQ 61 LR+RI V ++R G + D PPGDPGLFGPD+ WQVH+DF +M+ GGV+ALLLQ Sbjct: 8 LRERIVTQVRGMTRASGGLTLDIASPPGDPGLFGPDAVCWQVHADFPSMMAGGVSALLLQ 67 Query: 62 MLHPLPLAGVWDHSNFQADMLGRLRRTAQFVAGTTFGSRADAERLIARVKQIHLGVNGVA 121 LHP LAG+WDHS+F+ D+ GRL RTAQFVAGTT+GSR DA LI RVK IH V+G+A Sbjct: 68 ALHPRALAGIWDHSSFRDDLQGRLGRTAQFVAGTTYGSRRDALALIERVKAIHSRVHGIA 127 Query: 122 ADGRAYAASDPDLLTWVHVAEVHCFLQGYLRYRHPAFPAARQDQYFDEIAGVAEALGARA 181 DGR Y+A+DPDLLTWVHVAE+ FL GYLRY RQD+YF+E A VA LGAR Sbjct: 128 PDGRPYSANDPDLLTWVHVAEMSSFLAGYLRYVDAHLSGDRQDRYFEETALVAMLLGARD 187 Query: 182 VPRSSAAIASYIDGMRPQLRCDERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPPW 241 VP S AA+ +Y++ MR +L +RTR ++++++ AP QP R+ + G+ LLPPW Sbjct: 188 VPTSRAAVQAYLNAMRAELVASDRTRTVVEVLMSWQAPRPSLQPAVRMFLDAGIQLLPPW 247 Query: 242 AQQMLGVPPRPPWRRALLQHSVLLAAQPLRWAMRNGSL 279 A ML + +P R A ++ A LRWA+R GS+ Sbjct: 248 ALTMLAL-EQPTLRAAFTTAAMRTLAPTLRWALREGSV 284 >CC2570 Non COG Length = 299 Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 116/226 (51%), Gaps = 1/226 (0%) Query: 23 DFLQPPGDPGLFGPDSAAWQVHSDFTAMLTGGVAALLLQMLHPLPLAGVWDHSNFQADML 82 D+ PPG+P L P S W+V+ + A+ GGVAA+LL+ P +GVWDHS F+AD + Sbjct: 13 DYANPPGEPALLDPGSMHWRVYKNPIALAVGGVAAVLLEFAEPRIRSGVWDHSTFKADPI 72 Query: 83 GRLRRTAQFVAGTTFGSRADAERLIARVKQIHLGVNGVAADGRAYAASDPDLLTWVHVAE 142 GR RT +G + A R+I V +H V G G AY A DP+LL WV Sbjct: 73 GRAMRTGTAALIGVYGPASAARRVIQGVTHMHARVTGETPGGEAYTALDPELLDWVAATA 132 Query: 143 VHCFLQGYLRYRHPAFPAARQDQYFDEIAGVAEALGARAVPRSSAAIASYIDGMRPQLRC 202 V+ F+ Y R+ P A + ++++E A VA GA A P S A + + + P+ Sbjct: 133 VYGFVTAYDRFVAP-LTEADKTRFYEEAAPVARLYGATASPGSEAEFVAMLQALAPRFEP 191 Query: 203 DERTRQTLQLVLNAPAPNAVAQPWTRLMMRGGVDLLPPWAQQMLGV 248 + L+ + + A V +P R + R V LLPP ++ L + Sbjct: 192 HPIVDEFLETIASGKAAPVVPRPLHRALARAAVSLLPPMVRETLAL 237 >MT0848 [S] COG3662 Uncharacterized protein conserved in bacteria MtC Mycobacterium tuberculosis CDC1551 Length = 363 Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 77/184 (41%), Gaps = 8/184 (4%) Query: 34 FGPDSAAWQVHSDFTAMLTGGVAALLLQMLHPLPLAGVWDHSNFQADMLGRLRRTAQFVA 93 GPDS W+ D+ ML G A + Q +HP A V DHS F + RL R+ + Sbjct: 64 LGPDSLTWRYFGDWRGMLQGPWAGSM-QNMHPQLGAAVEDHSTFFRERWPRLLRSLYPIG 122 Query: 94 GTTF-GSRADAERLIARVKQIHLGVNGVAADGRAYAASDPDLLTWVHVAEVHCFLQGYLR 152 G F G RA + +V+ H+ + GV GR Y A +PD+ W H L R Sbjct: 123 GVVFDGDRAPVTGV--QVRDYHITIKGVDGAGRRYHALNPDVFYWAHATFFVGTLHVAER 180 Query: 153 YRHPAFPAARQDQYFDEIAGVAEALG--ARAVPRSSAAIASYIDGM-RPQLRCDERTRQT 209 + A++ Q FDE G R VP + Y D M R L + R Sbjct: 181 FCG-GLTEAQRRQLFDEHVQWYRMYGMSMRPVPATWEEFQDYWDHMCRNVLENNFAARAV 239 Query: 210 LQLV 213 L L Sbjct: 240 LDLT 243 >Rv0826 [S] COG3662 Uncharacterized protein conserved in bacteria Mtu Mycobacterium tuberculosis H37Rv Length = 351 Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 77/184 (41%), Gaps = 8/184 (4%) Query: 34 FGPDSAAWQVHSDFTAMLTGGVAALLLQMLHPLPLAGVWDHSNFQADMLGRLRRTAQFVA 93 GPDS W+ D+ ML G A + Q +HP A V DHS F + RL R+ + Sbjct: 52 LGPDSLTWRYFGDWRGMLQGPWAGSM-QNMHPQLGAAVEDHSTFFRERWPRLLRSLYPIG 110 Query: 94 GTTF-GSRADAERLIARVKQIHLGVNGVAADGRAYAASDPDLLTWVHVAEVHCFLQGYLR 152 G F G RA + +V+ H+ + GV GR Y A +PD+ W H L R Sbjct: 111 GVVFDGDRAPVTGV--QVRDYHITIKGVDGAGRRYHALNPDVFYWAHATFFVGTLHVAER 168 Query: 153 YRHPAFPAARQDQYFDEIAGVAEALG--ARAVPRSSAAIASYIDGM-RPQLRCDERTRQT 209 + A++ Q FDE G R VP + Y D M R L + R Sbjct: 169 FCG-GLTEAQRRQLFDEHVQWYRMYGMSMRPVPATWEEFQDYWDHMCRNVLENNFAARAV 227 Query: 210 LQLV 213 L L Sbjct: 228 LDLT 231