BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0215.p (486 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 506 e-143 PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 304 3e-82 RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 300 5e-81 RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 230 4e-60 PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 225 2e-58 >RSp1599 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 483 Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/472 (56%), Positives = 347/472 (73%), Gaps = 2/472 (0%) Query: 9 ALACALS--LAGCASGPDYTRPQVDMPAAWTPEAPWRSMQPADATPRGPWWERFGDAQLN 66 ALA +L+ L GC+ P Y RP +D+PA W EAPWR+ QPAD P+GPWW+RF D QL+ Sbjct: 10 ALAASLTTLLTGCSLAPPYARPAMDVPAHWQTEAPWRAAQPADDAPKGPWWQRFNDPQLD 69 Query: 67 ALQQQALAGNQTLAIATARLAQARAQLNVTGAAQTPQVNLNARAARSRISANRPLTNYNS 126 L +QAL NQ+L +A + L QA+A V A PQV + AR R SA+RPL++Y+S Sbjct: 70 RLMEQALHENQSLKVAVSNLEQAQALTRVARAGLLPQVTASTSGARLRTSADRPLSSYSS 129 Query: 127 PNFSTVQNDFALGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAELATNYF 186 P STVQNDF + A VSYE D FGRV+ ++ A A+ EQ+AA+LEN RLLL A++AT ++ Sbjct: 130 PTMSTVQNDFVVRADVSYEADLFGRVRGNIANAAASEEQAAANLENVRLLLAAQVATTWY 189 Query: 187 NLRELDVELDVVRRAIALQRQALELATARHDLGATSGLDMAQQQALLDSTLTQIDLLGRQ 246 +LRE D E+DVV++ +ALQR+AL+ +RH G SGLD+AQQQAL+DST TQ +LL +Q Sbjct: 190 SLRETDAEIDVVQQGLALQRKALDFVASRHQDGVASGLDLAQQQALVDSTATQAELLQKQ 249 Query: 247 RAQYEHAIATLTGTPAPAFSITPSLTPITPPAIPVGVPSDVLERRPDIAAAERAMAAANA 306 R QYEHA+ATL GTPAPAF I P+ PP IPV +PSDV+ERRPD+AAAER AAANA Sbjct: 250 RTQYEHALATLIGTPAPAFHIAPAPLAGQPPVIPVALPSDVIERRPDVAAAERGAAAANA 309 Query: 307 QIGVASAAYYPSFMLQPSYGVDSRNWATLFNAPSLLWSLGVSASQSLFDGGRLRAGVDFS 366 +GVA AA++PS ML G +SR+ A LF+APSLLWS G +Q++FD GR RA VDF+ Sbjct: 310 SVGVARAAFFPSIMLNGGAGWESRDLALLFSAPSLLWSFGTQIAQTVFDAGRTRARVDFA 369 Query: 367 QAGYEATVASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIASSRYEGG 426 AGY+ +A+YR+ VL A+QEVEDG++GL AL+RA AQ++ ++ SAR+V +IAS+RYEGG Sbjct: 370 NAGYQGAIANYRQAVLGALQEVEDGLSGLQALDRAAAQARASVESARKVYDIASARYEGG 429 Query: 427 ATPYLDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDWQSRTPPAEA 478 LDVI AQQSLLN++R A Q++GQ+L SVFL+KA GGDW P A Sbjct: 430 LATSLDVIAAQQSLLNNQRTAVQILGQQLTTSVFLVKAAGGDWSHPAEPPTA 481 >PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 498 Score = 304 bits (779), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 179/461 (38%), Positives = 256/461 (55%), Gaps = 6/461 (1%) Query: 17 AGCASGPDYTRPQVDMPAAWTPEAPWRSMQPADATPRGPWWERFGDAQLNALQQQALAGN 76 GCA GPDY RP + +PA + WR +P D RG WWE +GD LN LQ N Sbjct: 17 GGCAIGPDYQRPDLAVPAEFKEAEGWRRAEPRDVFQRGAWWELYGDQTLNDLQMHLERSN 76 Query: 77 QTLAIATARLAQARAQLNVTGAAQTPQVNLNARAARSRISANRPLT------NYNSPNFS 130 QTLA + A+ QA A + AA P + N RS +S Sbjct: 77 QTLAQSVAQFRQAEALVRGARAAFFPSITGNVGKTRSGQGGGDSTVLLPGGSTVSSGGSG 136 Query: 131 TVQNDFALGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAELATNYFNLRE 190 + ++ SVS+EVD +G+++R +EA A+ SAADL RL ++LA NY LR Sbjct: 137 AISTSYSTNLSVSWEVDLWGKLRRQLEANQASLHASAADLAAVRLSQQSQLAQNYLQLRV 196 Query: 191 LDVELDVVRRAIALQRQALELATARHDLGATSGLDMAQQQALLDSTLTQIDLLGRQRAQY 250 +D ++ ++ + ++L++A ++ G + D+AQ + L ST Q L QRAQ Sbjct: 197 MDEQIRLLNDTVTAYERSLKVAENKYRAGIVTRADVAQARTQLKSTQAQAIDLKYQRAQL 256 Query: 251 EHAIATLTGTPAPAFSITPSLTPITPPAIPVGVPSDVLERRPDIAAAERAMAAANAQIGV 310 EHAIA L G P F++ P + P +P VPS +LERRPDIA+AER + +ANAQIGV Sbjct: 257 EHAIAVLVGLPPAQFNLPPVASVPKLPDLPAVVPSQLLERRPDIASAERKVISANAQIGV 316 Query: 311 ASAAYYPSFMLQPSYGVDSRNWATLFNAPSLLWSLGVSASQSLFDGGRLRAGVDFSQAGY 370 A AAY+P L + G S + + + P+ WS+G + +LFDGG + + VD ++A Y Sbjct: 317 AKAAYFPDLTLSAAGGYRSGSLSNWISTPNRFWSIGPQFAMTLFDGGLIGSQVDQAEATY 376 Query: 371 EATVASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIASSRYEGGATPY 430 + TVA+YR+TVL +EVED + L+ L+ + A+ SAR L +A ++Y+ G Y Sbjct: 377 DQTVATYRQTVLDGFREVEDYLVQLSVLDEESGVQREALESAREALRLAENQYKAGTVDY 436 Query: 431 LDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDWQS 471 DV+T Q + L++ER L+G RL SV LI A+GG W S Sbjct: 437 TDVVTNQATALSNERTVLTLLGSRLTASVQLIAAMGGGWDS 477 >RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 300 bits (768), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 191/480 (39%), Positives = 272/480 (56%), Gaps = 35/480 (7%) Query: 16 LAGCASGPDYTRPQVDMPAAWTPEA-PWRSMQPADATPRGPWWERFGDAQLNALQQQALA 74 + CA GPDY RP D+P + A W+ P+DA RG WWE FGDAQLNAL++Q A Sbjct: 26 MTACAVGPDYKRPSADVPQQYKETAGDWKVGTPSDAITRGKWWEIFGDAQLNALEEQVAA 85 Query: 75 GNQTLAIATARLAQARAQLNVTGAAQTPQVNLNARA-----ARSRISANRPLTNYNSPNF 129 NQ + +A A+ QA+A + A P ++ +A A R+ +A+ L+ SP+ Sbjct: 86 ANQNILVAEAQYRQAQALVQSARAQFFPTISASASASRSRSVRTTTNADGSLST-GSPSI 144 Query: 130 STVQNDFALGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAELATNYFNLR 189 + Q+ L S+E+D +GR++R+VE+ A+AE SA DL + L A LA +YF LR Sbjct: 145 TNTQS---LTLDASWELDLWGRIRRTVESNKASAEASAGDLASALLSAQATLAQDYFQLR 201 Query: 190 ELDVELDVVRRAIALQRQALELATARHDLGA-------TSGLDMAQQQALL-DSTLTQID 241 D + V+RR +A + L+L ++ +G T+ + Q QALL D+ +T Sbjct: 202 VTDTQKAVLRRTVADYERFLQLTQNQYAVGVAQRSDVLTAQTQLKQTQALLLDAEVT--- 258 Query: 242 LLGRQRAQYEHAIATLTGTPAPAFSITP-------SLTPITPPAIPVGVPSDVLERRPDI 294 RAQ EHAIA L G AFS+ P L P+ P IP+ +PS VLERRPDI Sbjct: 259 -----RAQLEHAIAVLIGKSPSAFSLAPVSAATAQELPPL--PDIPLEIPSTVLERRPDI 311 Query: 295 AAAERAMAAANAQIGVASAAYYPSFMLQPSYGVDSRNWATLFNAPSLLWSLGVSASQSLF 354 AAAER +A ANA IGVA AAY+P+ L S G+ + + L PS +WS+G + + +LF Sbjct: 312 AAAERRVAQANANIGVAKAAYFPTLTLGASAGLSANTLSRLATLPSRIWSIGPTLAATLF 371 Query: 355 DGGRLRAGVDFSQAGYEATVASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARR 414 +GG L A V+ + A Y+A V +YR+TVL A Q+VED + L + + A+ SA+ Sbjct: 372 EGGALNAAVNKAGAAYDAAVGTYRQTVLGAFQDVEDNLAALRWQAQEFDVQNDAVQSAQE 431 Query: 415 VLEIASSRYEGGATPYLDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDWQSRTP 474 ++ +RY G +L+VITAQ + +ER L G+R +V L+KALGG W P Sbjct: 432 AAQLDLNRYRAGTISFLEVITAQATAYTAERTLLTLQGKRYSAAVLLVKALGGGWHGEVP 491 >RSp1114 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 230 bits (587), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 181/471 (38%), Positives = 258/471 (54%), Gaps = 22/471 (4%) Query: 23 PDYTRPQVDMPAAWTP-----EAP--------WRSMQPADATPRGPWWERFGDAQLNALQ 69 P Y +P V P A+ +AP W++ +P+ T G WW+ F DA L++L+ Sbjct: 35 PTYEKPDVGTPTAFKEAAQGADAPLAAGEQGKWKTAEPSMPTD-GAWWKLFNDATLDSLE 93 Query: 70 QQALAGNQTLAIATARLAQARAQLNVTGAAQTPQVNLNARAARSRISANRPLTNYNSPNF 129 QA + TLA A AR++QARA + AA P+++ R R SA +P Sbjct: 94 AQAGEASPTLAAAAARVSQARAIVQSNRAALFPELDAGFGPTRQRASAASAGLPVGAP-- 151 Query: 130 STVQNDFALGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAELATNYFNLR 189 Q + +VSYE D FGRV+ SV AA A AE+ A RL L A++A YF+LR Sbjct: 152 VQPQTYWRAQTTVSYEADLFGRVRNSVNAADADAERVEALYRAARLSLQADVAQTYFSLR 211 Query: 190 ELDVELDVVRRAIALQRQALELATARHDLGATSGLDMAQQQALLDSTLTQIDLLGRQRAQ 249 LD E ++ R + + +AL+L R G LD+A+ A L + + + R+RA Sbjct: 212 TLDAEEALLARTVVGREEALKLVQRRFSTGDIGELDVARADAELATARSDRLDVARRRAL 271 Query: 250 YEHAIATLTGTPAPAFSITPSLTPITPPAIPVGVPSDVLERRPDIAAAERAMAAANAQIG 309 EHA+ATL G F++ +P G+PS +LERRPD+AAAERAMAAANA+IG Sbjct: 272 LEHALATLLGKAPSGFTLGADPLQAANVRVPPGLPSALLERRPDVAAAERAMAAANARIG 331 Query: 310 VASAAYYPSFMLQPSYGVDSRNWATLFNAPSLLWSL----GVSASQSLFDGGRLRAGVDF 365 VA AA++P L +G +S + L S W L G + S +FDGG AGV Sbjct: 332 VARAAFFPQLQLTGGFGFESHDIGDLLKWSSRTWLLGPLVGTALSLPIFDGGARSAGVKQ 391 Query: 366 SQAGYEATVASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIASSRYEG 425 ++A YE VA+YR VL A +EVED ++ L L A+ ++ R +++ +RY Sbjct: 392 ARAAYEENVANYREAVLVAFREVEDNLSDLRLLADQSKVQDDAVRASTRAAQLSRTRYNA 451 Query: 426 GATPYLDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDWQSRTPPA 476 G+ YLDVI A++++L+++R A QL G R+ +V L+KALGG W PPA Sbjct: 452 GSVNYLDVIDAERNMLSTQRVAVQLAGGRVNATVGLVKALGGGWGD--PPA 500 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 160/476 (33%), Positives = 245/476 (51%), Gaps = 11/476 (2%) Query: 8 LALACALSLAGCASGPDYTRPQVDMPAAWTPEAPWRSMQPADATP-RGPWWERFGDAQLN 66 L L +L+L C+ GPD+TRP P W+ +A + A P WW F DAQLN Sbjct: 6 LLLIASLALGACSLGPDFTRPDRPAPGEWSLQAAAGNPSHLAAAPLAAQWWTLFDDAQLN 65 Query: 67 ALQQQALAGNQTLAIATARLAQARAQLNVTGAAQTPQVNLNARAARSRISAN---RPLTN 123 AL Q+ N L A ARL Q+RA G P V+ + R R ++ P Sbjct: 66 ALLQRVQRANLDLRSAAARLQQSRAIRRSLGGDALPSVDASGNYQRQRTTSAGLFDPSGK 125 Query: 124 YNSPNFSTVQNDFALGASVSYEVDFFGRVQRSVEAAGAAAEQSAADLENTRLLLTAELAT 183 N+ N G S+E+DF+GRV+R +EAA A E S +L + ++ + AE A Sbjct: 126 AGKGNY----NHALAGFDASWELDFWGRVRRELEAADATVEASENELRDVQVSVLAEAAR 181 Query: 184 NYFNLRELDVELDVVRRAIALQRQALELATARHDLGATSGLDMAQQQALLDSTLTQIDLL 243 +Y LR ++R + R++LEL R G + L++AQ A + S ++ + Sbjct: 182 DYIQLRGEQNRAAIIRDNLETARRSLELTRTRLANGVATDLEVAQALAQVASMEARLPEV 241 Query: 244 GRQRAQYEHAIATLTG-TPAPAFS-ITPS-LTPITPPAIPVGVPSDVLERRPDIAAAERA 300 + +A +A+ L G +P + + P+ P P ++PVG+PS++ +RRPDI AE Sbjct: 242 EKNQAHLVNALGYLVGASPGSLLAELGPARAIPRPPGSVPVGLPSELAQRRPDIRRAEAR 301 Query: 301 MAAANAQIGVASAAYYPSFMLQPSYGVDSRNWATLFNAPSLLWSLGVSASQSLFDGGRLR 360 + AA A IGVA A +YP L ++G +S ++L + +++G + S +F+GGRLR Sbjct: 302 LHAATASIGVAKADFYPRITLNGNFGFESLQLSSLGDWDHRQFAIGPAFSLPIFEGGRLR 361 Query: 361 AGVDFSQAGYEATVASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIAS 420 ++ +A + Y+RTVL A QEV+D + AA +R + A+A RR L+ A Sbjct: 362 GRLELREAQQQEAAIDYQRTVLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSAR 421 Query: 421 SRYEGGATPYLDVITAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDWQSRTPPA 476 +Y GA +L V+ +Q+ LL+++ Q L V L KALGG W + PA Sbjct: 422 EQYRAGAVDFLSVLDSQRQLLDNQEQQVASDEAVSLTLVNLYKALGGGWSPTSDPA 477