BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0214.p (516 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 392 e-108 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 359 7e-99 RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 357 5e-98 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 355 1e-97 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 354 3e-97 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust. Identities = 237/522 (45%), Positives = 341/522 (65%), Gaps = 20/522 (3%) Query: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 ++++I +L +FA V+ L + + I+ L N + + I + I+ + Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 64 PRMR--ISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLY-EKFS 120 + +S L +VT TP ++ + + A+ E ++ + K L+ E+F Sbjct: 63 YKANGILSNLLLVT--TPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFD 120 Query: 121 KSFATYLEIDKELARISGEGKEEEARALFKGDSNKT---FRSMIENMDEIIKVNDAGSKR 177 A + K A + + +EARAL++GD ++ + +++ M V+ + Sbjct: 121 ARSAYGASVRKFFALVDAD-NVQEARALYQGDMSRLQDRYYVLVDKM-----VDHQAGEM 174 Query: 178 SDDMAEQVYRSAT----LWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGD 233 D++E + A + ++ +LA ++ IA G + R ++RP+N A+ +AE VAQG+ Sbjct: 175 EHDVSEAAAQGANAKIQMIVLAVLATLLAIATG--AFITRTITRPINHAMHLAEAVAQGN 232 Query: 234 LTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTE 293 LT + + DE G L+ +L+ M ++L IV +VR GTDTIT AS E+A+GN+DLSSRTE Sbjct: 233 LTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTE 292 Query: 294 EQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITE 353 +QA SLEETA+AME+LT+TVKQNADNA++A++LA++AS +AT+GG V + +QTM I Sbjct: 293 QQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINT 352 Query: 354 SSNRIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 413 SS +I DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKE Sbjct: 353 SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKE 412 Query: 414 IKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASSEQSTGIEEINRA 473 IK LI+DSV V G+ VE AG + +VVA ++ VT++V+EISA+S EQS GIE+IN A Sbjct: 413 IKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEA 472 Query: 474 ITQMDEVTQQNAALVEEATAAAQSLQDQAARLSQVVSVFKLQ 515 ITQMD+ TQ+NA+LVEE+ AAQ+LQDQA +L+ +VS FKL Sbjct: 473 ITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLH 514 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 359 bits (922), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 205/309 (66%), Positives = 252/309 (81%), Gaps = 4/309 (1%) Query: 210 MVARAVSRPLNEAVAVAERVAQGDLT--MD--IRATSTDETGMLMHSLRAMNDSLQQIVG 265 ++ R + RPL A+ V ER+A GDL MD RA DET LMH++ +M SLQ++VG Sbjct: 213 VLGRTLVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVG 272 Query: 266 EVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQ 325 +VRTG+D+I +A+++IA GN DLS RTE+QA SLEETAS+MEELT+ VKQNADNARQA+ Sbjct: 273 QVRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQAST 332 Query: 326 LAASASDIATQGGAVVGQVVQTMEGITESSNRIADIIGVIDGIAFQTNILALNAAVEAAR 385 LA +ASD+A +GG VVG+VV+TM GI SS +IADIIGVI+GIAFQTNILALNAAVEAAR Sbjct: 333 LAVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAAR 392 Query: 386 AGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVAS 445 AGEQGRGFAVVA EVRSLAQRSA AAKEIK+LI DSV++V GS+LV AG + EVV + Sbjct: 393 AGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVA 452 Query: 446 VRRVTDVVAEISAASSEQSTGIEEINRAITQMDEVTQQNAALVEEATAAAQSLQDQAARL 505 V+RVTD++ EISAAS EQS+GIE++N+A+ QMDEVTQQNAALVE+A AAA+SL+ QA L Sbjct: 453 VKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEQAAAAAESLEAQAEAL 512 Query: 506 SQVVSVFKL 514 Q VS F++ Sbjct: 513 RQAVSAFRV 521 >RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 357 bits (915), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 246/534 (46%), Positives = 336/534 (62%), Gaps = 50/534 (9%) Query: 7 LKIAKKL-IVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASLPR 65 L I +L +V F + L + L + L++ N A + +N L + +A +A L + Sbjct: 4 LSIKARLALVLFVLAVFLAGVGALGLVGNLRS-NAALKETYSNNLASTRALGLAEAKLAQ 62 Query: 66 MRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFSKSFAT 125 R + + + PA+ DA+ I +AQI +E K++A Sbjct: 63 ARTALDRAIFETDPAKTTDAISRI--------------QAQIGNSE---------KAWAE 99 Query: 126 YLEID---KELARISGEGKEEE-----------ARALFKGDSNKTFRSMIENMDEIIKVN 171 YL + E +++GE K++ AL +GD + + +E + + Sbjct: 100 YLNLPFSTPEEEKVAGEAKKQRDLIIKDNIAAAVEALKRGDKDAARQLAVEQIPYNFRTY 159 Query: 172 DAGSKRSDDMAEQV----YRSATLWIIGLLAAIVVI-------ALGLAVMVARAVSRPLN 220 + S R + + +V Y ++ + GL+ V++ A G ++++RA+S PL Sbjct: 160 ASQSDRLNAIQTEVSAALYEASQSFFKGLVWTFVIVIAAGLALAAGCYLILSRAISLPLA 219 Query: 221 EAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQE 280 E + +A G+LT D+R S DE G+LM L+ M D L+ V VR G+++I +A+Q+ Sbjct: 220 EMLVHFREIASGNLTTDVRVRSRDEMGVLMEGLQQMQDKLKATVLTVRHGSESIASATQQ 279 Query: 281 IATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAV 340 IA GN +LS RTEEQA SLEETAS+MEELT+ VKQNADNARQA+ LA +AS IA QGGAV Sbjct: 280 IAAGNTNLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASTLAENASGIAMQGGAV 339 Query: 341 VGQVVQTMEGITESSNRIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 400 V VV TM I+ESS +I DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EV Sbjct: 340 VQDVVTTMAQISESSRKITDIIAVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEV 399 Query: 401 RSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAAS 460 R+LAQRSA AAKEIK LI+DS +V +GS LV RAG TM E+V +V+RVTD++ EISA S Sbjct: 400 RTLAQRSAGAAKEIKSLIEDSATRVESGSSLVARAGKTMDEIVVAVKRVTDIMGEISAGS 459 Query: 461 SEQSTGIEEINRAITQMDEVTQQNAALVEEATAAAQSLQDQAARLSQVVSVFKL 514 +EQSTGIE+IN A+TQMD+VTQQNAALVE+A AAAQ+L++QA L + VSVF++ Sbjct: 460 AEQSTGIEQINEAVTQMDDVTQQNAALVEQAAAAAQALEEQADELRRAVSVFRV 513 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 355 bits (911), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 239/535 (44%), Positives = 326/535 (60%), Gaps = 49/535 (9%) Query: 4 FNNLKIAKKLIVSFAAVIVLTVILG---LFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 F + I +L + A V VL V++G L +R QA+ +M + A ++ Sbjct: 2 FRGMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYEM------QLAGAVALA 55 Query: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAA---YEAQISEAEEKVLYE 117 S M L + AA + K ++ LAK A+ Y A S +E+ L + Sbjct: 56 ESDASMLSFRLVLDRAAMDIKAPSLGKTLERARMFLAKSDASWKRYRALPSTPDERKLAD 115 Query: 118 KFSKSFATYLEIDKELARISGEGKEEEARALFKGDSNKTFRSMIENMDEIIKV------- 170 + +L +G + +A+ GD+ +T ++++E M + + Sbjct: 116 EADALRTVFLR----------DGAQALMQAIQAGDAERTSQTVMEAMPALYRPLGDKVTA 165 Query: 171 ------------NDAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRP 218 +AG + D ++ + I+G ++ +L R+++ P Sbjct: 166 LSRMQMEIARASYEAGQREHDGLSALTAALLLVGIVG--GGLLTWSL------RRSITVP 217 Query: 219 LNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTAS 278 LN A+ AE + +GDLT I DETG ++ +L+ M +SLQ +VG+VRTG+D I +A+ Sbjct: 218 LNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASAT 277 Query: 279 QEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGG 338 Q+IA GN DLS RTE+QA SLEETAS+ME+LT VKQNAD+ARQA+ LA +ASDIA +GG Sbjct: 278 QQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAVNASDIAVKGG 337 Query: 339 AVVGQVVQTMEGITESSNRIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 398 VVG+VV+TM GI +SS +IADIIGVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 338 EVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAG 397 Query: 399 EVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISA 458 EVRSLAQRSA AAKEIK LI DSV +V +G+ LV AG + EVV +V+RVT ++ EISA Sbjct: 398 EVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEISA 457 Query: 459 ASSEQSTGIEEINRAITQMDEVTQQNAALVEEATAAAQSLQDQAARLSQVVSVFK 513 AS QS GI ++N+A+TQMDE TQQNAALVE+A AAA SLQ+QA L V+ F+ Sbjct: 458 ASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAFR 512 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 354 bits (908), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 190/298 (63%), Positives = 230/298 (77%) Query: 217 RPLNEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITT 276 PLN +A + +A GDLT +I +E G L SL+ M L IVGEVR G D I + Sbjct: 220 HPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYS 279 Query: 277 ASQEIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQ 336 + EIA GN DLS+RTE+QA SLEETA++ME+LTATVKQNA+NARQA+QLA SAS+ A + Sbjct: 280 GASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQK 339 Query: 337 GGAVVGQVVQTMEGITESSNRIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 396 GG VV VVQTM I SS +IADI VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 340 GGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 399 Query: 397 ASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEI 456 A EVR+LAQRSA AAKEIK LIDDSV +V GS LVE AG TM ++V +V RVTD++ EI Sbjct: 400 AGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEI 459 Query: 457 SAASSEQSTGIEEINRAITQMDEVTQQNAALVEEATAAAQSLQDQAARLSQVVSVFKL 514 ++AS EQS GI++I +A+ +MD VTQQNA+LVEE+ +AA SL++QA+ L+Q +SVF L Sbjct: 460 ASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVL 517