BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0213.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZbaeR [TK] COG0745 Response regulators consisting of a CheY-like... 257 2e-68 ECs2887 [TK] COG0745 Response regulators consisting of a CheY-li... 256 3e-68 baeR [TK] COG0745 Response regulators consisting of a CheY-like ... 255 6e-68 STM2131 [TK] COG0745 Response regulators consisting of a CheY-li... 254 2e-67 RSp1161 [TK] COG0745 Response regulators consisting of a CheY-li... 248 7e-66 >ZbaeR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 240 Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 135/223 (60%), Positives = 165/223 (73%), Gaps = 2/223 (0%) Query: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y+ ++ GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRRCK-P 130 Query: 138 QQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHLH 197 Q+ Q A S L ID+ R QAS RG+ L+LTP E RLLKT + PG+VFSREQLLNHL+ Sbjct: 131 QRELQQQDAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 198 DDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 DD R VTDR +D+HIKNLRRKLE + I+AVYGVGY +E Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >ECs2887 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 240 Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/223 (60%), Positives = 165/223 (73%), Gaps = 2/223 (0%) Query: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y+ ++ GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRRCK-P 130 Query: 138 QQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHLH 197 Q+ Q A S L ID+ R QAS RG+ L+LTP E RLLKT + PG+VFSREQLLNHL+ Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 198 DDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 DD R VTDR +D+HIKNLRRKLE + I+AVYGVGY +E Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >baeR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 240 Score = 255 bits (651), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 135/223 (60%), Positives = 165/223 (73%), Gaps = 2/223 (0%) Query: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y+ ++ GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRRCK-P 130 Query: 138 QQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHLH 197 Q+ Q A S L ID+ R QAS RG+ L+LTP E RLLKT + PG+VFSREQLLNHL+ Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 198 DDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 DD R VTDR +D+HIKNLRRKLE + I+AVYGVGY +E Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >STM2131 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 240 Score = 254 bits (648), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/223 (60%), Positives = 164/223 (73%), Gaps = 2/223 (0%) Query: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKL +LL YL A Y+ + GD L VR PDLILLD+MLPG DG + Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLTL 72 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALV 137 CR++R FSD+P++M+TA+ EE DRL GLE+GADDYI K P+SPRE+VARVK++LRR Sbjct: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICK-PYSPREVVARVKTILRRCK-P 130 Query: 138 QQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHLH 197 Q+ Q A S L ID+ R QAS G+AL+LTP E RLLKT + PG+VFSREQLLNHL+ Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 198 DDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 DD R VTDR +D+HIKNLRRKLE + I+AVYGVGY +E Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >RSp1161 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 219 Score = 248 bits (634), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 129/220 (58%), Positives = 161/220 (73%), Gaps = 6/220 (2%) Query: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 ILIVEDEPKLA L+ YL A Y V G A+ VR P+L+LLD+MLPG DG EI Sbjct: 2 ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 61 Query: 78 CRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNALV 137 CR++R FSD+P++M+TAR EE DRL GLELGADDYI K PFSPRE+VAR+K++LRR V Sbjct: 62 CREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICK-PFSPRELVARIKTILRR---V 117 Query: 138 QQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHLH 197 Q+ AQ+ SLL ID+ + A++RG+ L+LTP+E RLL A+APG++ SR LL ++ Sbjct: 118 QRSGAQSD--SLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIY 175 Query: 198 DDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 237 DD R VTDR VDTH+KNLRRK+E PG I +VYGVGY Sbjct: 176 DDHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGY 215