BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0208.p (711 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 491 e-138 PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 471 e-132 CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibri... 413 e-115 STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhi... 389 e-107 RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 371 e-102 >RSp0817 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 491 Score = 491 bits (1265), Expect = e-138, Method: Compositional matrix adjust. Identities = 255/421 (60%), Positives = 318/421 (75%), Gaps = 4/421 (0%) Query: 284 HLGWREFFLDPRLQQVIATALDNNRDLRVAALNIEKARAQYRITDADRYPSISATGASSA 343 +GWR+ F DP LQ+VI AL NNRDLRVA LN+EKARAQYR+ DA +P++ A+G+ SA Sbjct: 56 EIGWRDVFTDPSLQRVIDLALANNRDLRVAVLNLEKARAQYRVQDAALFPTVKASGSESA 115 Query: 344 SRTPAELSTTGRAAVSRQQSVTVGVSAYELDFFGRLKNLSDAALESYQYQVETRRSTHIS 403 SRTPA LS TG+ VS S T+G SAYELD FGR+++LS ALE Y VE RRS+ IS Sbjct: 116 SRTPAALSATGQPVVSHTYSATLGFSAYELDLFGRVRSLSAQALEQYLATVEARRSSQIS 175 Query: 404 LVAEVATAWLTLASDRDLLKLAQDTYASQSRTFALSQRSHDIGTVSGVDLASQEATVESA 463 LVAEVATA+LTLA+D+DLLKLAQDT +SQS T+ L+QRS+++GT S + L + +V++A Sbjct: 176 LVAEVATAYLTLAADQDLLKLAQDTLSSQSDTYRLNQRSYELGTASRLTLRQSQTSVDAA 235 Query: 464 RADVARYASQVEQDLNALRLLVGADIDAALLPAGLPD----TASVLPATPAGLPSQVLLR 519 R DV RY +QV QD NAL LLVGAD+ A LLP LPD + SVL P GL S +L R Sbjct: 236 RVDVERYTAQVAQDRNALVLLVGADVPAELLPRSLPDPSAASGSVLATIPPGLASDLLQR 295 Query: 520 RPDVLAAEHTLKSANADIGAARAAFFPSISLTANGGTASRTLGGLFKAGSGSWTFSPSIN 579 RPD+L AEH LK+ANA+IGAARAAFFPSISLTA+ GT+S +L GLFK GSG W+F P I+ Sbjct: 296 RPDILQAEHDLKAANANIGAARAAFFPSISLTASAGTSSASLAGLFKGGSGVWSFGPQIS 355 Query: 580 LPIFNAGSLRASLDSAKITRDIDVANYEKAIQTAFREVADALAVRATLDQRLDAQGKATA 639 LPIF+ G+ RA+LD A +RDI +A YEKAIQTAFREV+DALA R TL ++LDAQ Sbjct: 356 LPIFDGGANRANLDIANASRDIALAQYEKAIQTAFREVSDALAQRGTLGRQLDAQQSLVD 415 Query: 640 ASEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWS 699 A+ +++L+ AR++ GVDSYL L +QR+LY+AQQ LI+ RL+ +N T YK LGGGW Sbjct: 416 ATSDSYQLATARFKRGVDSYLNVLDSQRSLYTAQQNLINTRLSRLTNLATFYKTLGGGWV 475 Query: 700 E 700 E Sbjct: 476 E 476 >PA0427 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 485 Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/432 (57%), Positives = 309/432 (71%), Gaps = 7/432 (1%) Query: 274 GQAAGE------IDADHLGWREFFLDPRLQQVIATALDNNRDLRVAALNIEKARAQYRIT 327 GQA G+ + A +GWREFF DP+LQQ+I AL+NNRDLRVAALN+E RAQYRI Sbjct: 38 GQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQ 97 Query: 328 DADRYPSISATGASSASRTPAELSTTGRAAVSRQQSVTVGVSAYELDFFGRLKNLSDAAL 387 AD +P I G+ + R P +LSTTG A+S Q VT+G +A+ELD FGRL++L D AL Sbjct: 98 RADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQAL 157 Query: 388 ESYQYQVETRRSTHISLVAEVATAWLTLASDRDLLKLAQDTYASQSRTFALSQRSHDIGT 447 E Y + +RS +LVA VATA+LTL +D+ L+L +DT + ++F L+QRS+D+G Sbjct: 158 EQYLATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGV 217 Query: 448 VSGVDLASQEATVESARADVARYASQVEQDLNALRLLVGADIDAALLPAGLPDTASVLPA 507 S +DL + VE ARA +A+Y V QD NAL LL+G+ I A L P GL ++L Sbjct: 218 ASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGIPANL-PQGLGLDQTLLTE 276 Query: 508 TPAGLPSQVLLRRPDVLAAEHTLKSANADIGAARAAFFPSISLTANGGTASRTLGGLFKA 567 PAGLPS +L RRPD+L AEH L +ANA IGAARAAFFPSISLTAN GT SR L GLF A Sbjct: 277 VPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDA 336 Query: 568 GSGSWTFSPSINLPIFNAGSLRASLDSAKITRDIDVANYEKAIQTAFREVADALAVRATL 627 GSGSW F PSINLPIF AGSLRASLD AKI +DI+VA YEKAIQTAF+EVAD LA R T Sbjct: 337 GSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTF 396 Query: 628 DQRLDAQGKATAASEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQSNR 687 ++L AQ AS++ ++L+D RYR GVD+YLT L AQR+L++AQQ LI+ RL + ++ Sbjct: 397 TEQLQAQRDLVKASDEYYQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSE 456 Query: 688 ITLYKVLGGGWS 699 + LYK LGGGW+ Sbjct: 457 VNLYKALGGGWN 468 >CC0806 [MU] COG1538 Outer membrane protein Ccr Caulobacter vibrioides Length = 467 Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust. Identities = 228/423 (53%), Positives = 292/423 (69%) Query: 275 QAAGEIDADHLGWREFFLDPRLQQVIATALDNNRDLRVAALNIEKARAQYRITDADRYPS 334 +AA + A L WR+ +DPRLQ V+ AL NRDLRVA LNIEKARAQY + + +P Sbjct: 41 EAATTVSAADLDWRQVLVDPRLQGVVDLALQQNRDLRVAVLNIEKARAQYGVQRSALFPG 100 Query: 335 ISATGASSASRTPAELSTTGRAAVSRQQSVTVGVSAYELDFFGRLKNLSDAALESYQYQV 394 +S + RTPA S TG+ + + T+G +AYELD FGR+++L DAAL+SY Sbjct: 101 VSGAVSEQRGRTPASTSPTGQPFETDVFNATIGFTAYELDLFGRVRSLKDAALQSYLATE 160 Query: 395 ETRRSTHISLVAEVATAWLTLASDRDLLKLAQDTYASQSRTFALSQRSHDIGTVSGVDLA 454 +T RS +SL+AE+A AWLTLA+D++ L LA+ T A++ + L ++ D G S +DL Sbjct: 161 QTSRSVRVSLIAEIANAWLTLAADQERLALAKTTLATREDSLRLVRQRVDGGAGSLLDLR 220 Query: 455 SQEATVESARADVARYASQVEQDLNALRLLVGADIDAALLPAGLPDTASVLPATPAGLPS 514 + E E+ARADVA Y +QV QD NAL LL G D+ LLP G D SVL PAGLPS Sbjct: 221 NAETLAETARADVAVYTAQVAQDRNALTLLAGGDLPVDLLPPGRLDADSVLADLPAGLPS 280 Query: 515 QVLLRRPDVLAAEHTLKSANADIGAARAAFFPSISLTANGGTASRTLGGLFKAGSGSWTF 574 VL RRPDVLAAE L++ANA+IGAARAAFFP ISLT + G+AS L GLFK+G+ W+F Sbjct: 281 DVLARRPDVLAAERQLQAANANIGAARAAFFPRISLTGSAGSASTDLDGLFKSGTSIWSF 340 Query: 575 SPSINLPIFNAGSLRASLDSAKITRDIDVANYEKAIQTAFREVADALAVRATLDQRLDAQ 634 +P I+LPIF G+ A+L+ +K RDI VA YEK +QTAFREV+DAL+VRAT+ RL AQ Sbjct: 341 TPQISLPIFAGGANVANLNISKADRDIAVATYEKTVQTAFREVSDALSVRATVADRLTAQ 400 Query: 635 GKATAASEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVL 694 + TAA+ + RLS R G+DS LT L AQR+LY+AQQ LIS RL + +N +TLYK L Sbjct: 401 ERLTAAAADSTRLSQQRRDAGLDSALTLLDAQRSLYTAQQGLISARLAQATNLVTLYKTL 460 Query: 695 GGG 697 GGG Sbjct: 461 GGG 463 >STM0350 [MU] COG1538 Outer membrane protein Sty Salmonella typhimurium LT2 Length = 503 Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust. Identities = 217/486 (44%), Positives = 300/486 (61%), Gaps = 25/486 (5%) Query: 246 GIFGMSNDVYFQVGLLTTVG---------LSAKNARPGQ------------AAGEIDADH 284 GI ++ Y Q L T+ ++ K+ RP +G DA Sbjct: 17 GIMKITFTGYRQTATLATLAFVTTLAGCTMAPKHERPASPTAMVYPYATSTVSGAPDAAD 76 Query: 285 LGWREFFLDPRLQQVIATALDNNRDLRVAALNIEKARAQYRITDADRYPSISATGASSAS 344 +GWR+FF DP LQ++IA AL NNRDLR A LN+E ARA YRI A+ P++ A AS Sbjct: 77 IGWRDFFHDPLLQELIAIALRNNRDLRKAGLNVEAARALYRIQRAEMLPTLGIATAMDAS 136 Query: 345 RTPAELSTTGRAAVSRQQSVTVGVSAYELDFFGRLKNLSDAALESYQYQVETRRSTHISL 404 RTPA+LS + ++R+ +A+ELD +GR+++LSD AL +Y ET + +SL Sbjct: 137 RTPADLSVMDESEINRRYEAAGATTAWELDLWGRVRSLSDQALAAYMALDETYIAARMSL 196 Query: 405 VAEVATAWLTLASDRDLLKLAQDTYASQSRTFALSQRSHDIGTVSGVDLASQEATVESAR 464 V+EVA+AWLTL +DR+LL+L +DT A+Q ++ L+ + G + +DL E + SA Sbjct: 197 VSEVASAWLTLRADRELLRLTEDTLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAE 256 Query: 465 ADVARYASQVEQDLNALRLLVGADIDAAL---LPAGLPDTASVLPAT-PAGLPSQVLLRR 520 + A Y Q+ +D NAL LL+G + L L + T +P T P GLPS +L+RR Sbjct: 257 INRAAYTRQLARDRNALELLLGQPLTPELSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRR 316 Query: 521 PDVLAAEHTLKSANADIGAARAAFFPSISLTANGGTASRTLGGLFKAGSGSWTFSPSINL 580 PD+ AAE+ L+ ANA IGAARAAFFP+ISLT + GTAS +L GLF+ GSGSW F P I L Sbjct: 317 PDIRAAEYRLRGANARIGAARAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITL 376 Query: 581 PIFNAGSLRASLDSAKITRDIDVANYEKAIQTAFREVADALAVRATLDQRLDAQGKATAA 640 P+F+ G+LRA LD A + + I++A YE IQ AFR+VAD LA + TL+ ++ ++ +A A Sbjct: 377 PLFHGGALRADLDRAHVQKQIEIARYENVIQQAFRDVADGLAGQRTLNDQVQSEQRAVEA 436 Query: 641 SEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWSE 700 S+ A+ L+ R++ GVD YLT L R LY AQQ L+ RL +Q N I LYK LGGGW E Sbjct: 437 SQIAYELAGLRFQEGVDDYLTLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKALGGGWRE 496 Query: 701 QTQPMQ 706 ++ Q Sbjct: 497 YSEKKQ 502 >RSc0009 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 514 Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/438 (47%), Positives = 282/438 (64%), Gaps = 3/438 (0%) Query: 265 GLSAKNARPGQAAGEIDADHLGWREFFLDPRLQQVIATALDNNRDLRVAALNIEKARAQY 324 G+SA A+PG+ A A LGWREFF DPRLQ++I +L+NNRDLRVA LNIE ARAQY Sbjct: 51 GVSADTAKPGETAPR--ATDLGWREFFPDPRLQRLIGLSLENNRDLRVAILNIEAARAQY 108 Query: 325 RITDADRYPSISATGASSASRTPAELSTTGRAAVSRQQSVTVGVSAYELDFFGRLKNLSD 384 R AD P I+AT + S TP +S TG+ ++Q + VG+S Y+++ F + +++ Sbjct: 109 RQQIADLLPPINATATYTRSLTPQSISQTGQDINTKQYQLGVGISNYQVNLFS-VGDVTS 167 Query: 385 AALESYQYQVETRRSTHISLVAEVATAWLTLASDRDLLKLAQDTYASQSRTFALSQRSHD 444 +A SY E +R+T ISL+++VA A+L + + L+LAQ T + + L+++ D Sbjct: 168 SARASYLATEEGQRATQISLISQVAKAYLNERAYAEQLELAQQTLKGREDYYKLAKQRFD 227 Query: 445 IGTVSGVDLASQEATVESARADVARYASQVEQDLNALRLLVGADIDAALLPAGLPDTASV 504 +G S +DL E VESAR VA+ Q Q NAL LLVG+ + A L P + + Sbjct: 228 VGASSALDLRQNETLVESARVSVAQLTRQYAQATNALVLLVGSPLPADLPPPTTVSSEKI 287 Query: 505 LPATPAGLPSQVLLRRPDVLAAEHTLKSANADIGAARAAFFPSISLTANGGTASRTLGGL 564 + P GLPS++L +RPD+ AE L +ANA+IG ARAAFFPS+ LT+N GTAS L L Sbjct: 288 VADIPPGLPSELLEQRPDIRQAEQKLVAANANIGVARAAFFPSLGLTSNVGTASTALHDL 347 Query: 565 FKAGSGSWTFSPSINLPIFNAGSLRASLDSAKITRDIDVANYEKAIQTAFREVADALAVR 624 FK+G+G W+F P++ LPIFN G+ +LD K + I VANYEK IQTAF+EV+DAL R Sbjct: 348 FKSGTGLWSFVPNLTLPIFNWGTNVFNLDLTKANQKIAVANYEKTIQTAFQEVSDALVAR 407 Query: 625 ATLDQRLDAQGKATAASEKAFRLSDARYRNGVDSYLTTLVAQRTLYSAQQTLISLRLTEQ 684 TLD+++ AQ + A+ + LSD RYRNGV S+L L AQR L+SA QTL+ RL Sbjct: 408 GTLDEQVAAQKRFRDATAERLTLSDQRYRNGVSSFLDVLDAQRDLFSADQTLVQTRLARL 467 Query: 685 SNRITLYKVLGGGWSEQT 702 +N + LY LGGG E + Sbjct: 468 TNAVDLYTALGGGLQEHS 485