BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0206.p (289 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0831 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso... 358 1e-98 AGl3333 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu... 280 2e-75 SMc04145 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sm... 260 2e-69 AGl1767 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu... 224 2e-58 DRA0222 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Dra... 179 6e-45 >RSp0831 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso Ralstonia solanacearum Length = 282 Score = 358 bits (918), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 176/271 (64%), Positives = 205/271 (75%), Gaps = 9/271 (3%) Query: 14 RFSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAHEEVLGCDLADRAA 73 R RLLLTGA G +GK LR RL +AEV+RV+D+ AA A EEV+ CDLAD A Sbjct: 19 RCHRLLLTGAGGNLGKVLRERLTRYAEVLRVSDITDLCAA----RAGEEVVPCDLADAQA 74 Query: 74 VDAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVKRVIFASSNHVTGF 133 VDA+V G +AI+HLGG+SVERPF+EIL ANI+G +H+YEAARRHGVKR+ FASSNH GF Sbjct: 75 VDALVKGVDAIVHLGGISVERPFDEILPANIQGTYHLYEAARRHGVKRIAFASSNHAIGF 134 Query: 134 YGQDERIXPPPIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATN 193 Y Q E IDAR RPDGYYGLSK +GE + FYFDRYG+ETV+IRIGS FPEA + Sbjct: 135 YRQGE-----VIDARVPTRPDGYYGLSKVFGEQLGSFYFDRYGIETVAIRIGSSFPEAKD 189 Query: 194 RRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEI 253 RRML +W+ DD EQL+RR+LF+P+VG TIVYGMS N + WWDNR+AAHLGY P SSE Sbjct: 190 RRMLVTWLGYDDLEQLIRRALFVPNVGFTIVYGMSGNREAWWDNRHAAHLGYVPAQSSEA 249 Query: 254 FRAKVEAQPMPAPDDPVLTLQGGAFTTAGPF 284 FRA+VEAQP A DDP QGGAF AGPF Sbjct: 250 FRAQVEAQPPLAADDPAARFQGGAFVKAGPF 280 >AGl3333 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 283 Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/267 (50%), Positives = 184/267 (68%), Gaps = 12/267 (4%) Query: 15 FSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAHEEVLGCDLADRAAV 74 RLL+TGAAG +G+ +R RLA AE++R+ADL+ +DPA +EE + CDLAD AV Sbjct: 19 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSP----LDPAGPNEECVQCDLADANAV 74 Query: 75 DAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVKRVIFASSNHVTGFY 134 +AMVAGC+ I+HLGG+SVE+PFE+IL+ NI G++++YEAAR HG R++FASSNH G+Y Sbjct: 75 NAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYY 134 Query: 135 GQDERIXPPPIDARDMK-RPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATN 193 Q ER+ P D+ RPDG YG+SK +GE++A+ YFD++G ET +RIGS PE N Sbjct: 135 PQTERLGP------DVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN 188 Query: 194 RRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEI 253 RML++W S DDF L+ P +G +V+G SAN WWDN + LG+ PKD++E Sbjct: 189 YRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDNSHLGFLGWKPKDNAEA 248 Query: 254 FRAKV-EAQPMPAPDDPVLTLQGGAFT 279 FR + E P P P+D ++ QGG F Sbjct: 249 FRRHITETTPPPDPNDALVRFQGGTFV 275 >SMc04145 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Sme Sinorhizobium meliloti Length = 261 Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 130/266 (48%), Positives = 184/266 (69%), Gaps = 11/266 (4%) Query: 16 SRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAHEEVLGCDLADRAAVD 75 +RLL+TGAAGG+G+ R L A+V+R++D+A+ + PA EE++ CDLA+R AVD Sbjct: 3 TRLLITGAAGGLGRYAREGLKGCADVLRLSDVAT----LSPAGEGEEIVRCDLAEREAVD 58 Query: 76 AMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVKRVIFASSNHVTGFYG 135 +V GC+AI+HLG +SVE F+ +L+ANI G +++YEAAR+ GV R++FAS+NHVTGF+ Sbjct: 59 QLVRGCDAILHLGAISVESDFDALLQANILGTYNLYEAARKAGVNRILFASTNHVTGFHP 118 Query: 136 QDERIXPPPIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATNRR 195 E +D +RPD YG+SK +GED+++ YFD+YG+ET +RIGS F E TNRR Sbjct: 119 IGE-----TLDHLSPRRPDSLYGVSKCFGEDLSRLYFDKYGMETACLRIGSCFAEPTNRR 173 Query: 196 MLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEIFR 255 ML++W+S DF L+RR L P +GH ++YG+SAN WW N +A LG+ P+DSSE +R Sbjct: 174 MLSTWLSPRDFLALVRRLLDAPKIGHLVLYGVSANRDVWWSNGHADFLGWRPQDSSEPYR 233 Query: 256 AKVEAQPMPAPDDPVLTLQGGAFTTA 281 ++E + P D V QGG A Sbjct: 234 HEIEKRE-EEPSDGV-RYQGGRHAAA 257 >AGl1767 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 265 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/266 (41%), Positives = 167/266 (62%), Gaps = 12/266 (4%) Query: 15 FSRLLLTGAAGGVGKQLRARLASFAEVVRVADLASAMAAVDPAAAHEEVLGCDLADRAAV 74 RLL+TGA G +G LR RL A+ +R++D+ + A+ HEE++ C L D AV Sbjct: 2 LKRLLITGAGGKLGSMLRGRLGHVAQTIRLSDVVD----LGSASPHEELVSCALEDEQAV 57 Query: 75 DAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVKRVIFASSNHVTGFY 134 +V GC+ I+HLGGVSVER F+ I AN++GV+++YEAAR +G+ R++FASSNH G+Y Sbjct: 58 HDLVKGCDGIVHLGGVSVERAFDPIEAANLRGVYNLYEAARLNGMPRILFASSNHTIGYY 117 Query: 135 GQDERIXP-PPIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATN 193 Q +++ P P PDG YG+SK +GE MA Y ++G ET +RIGS + +N Sbjct: 118 PQGQQLAPDTPF------LPDGLYGVSKIFGEAMASLYHSKFGQETAIVRIGSCEEKPSN 171 Query: 194 RRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEI 253 RML++W+S DF L+ + P +G +++G+SAN +WWDN + LG+ +D++ Sbjct: 172 WRMLSTWLSHGDFVSLIEATFRAPKLGCPVIWGVSANDDSWWDNSHVDFLGWQRRDNAAD 231 Query: 254 FRAKVEAQ-PMPAPDDPVLTLQGGAF 278 +RA++E P P+ + QGG F Sbjct: 232 YRAEIERDVSRPDPEAAIAKYQGGIF 257 >DRA0222 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Dra Deinococcus radiodurans Length = 288 Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 144/248 (58%), Gaps = 15/248 (6%) Query: 17 RLLLTGAAGGVG----KQLRARLASFAEVVRVADLASAMAAVDPAAAHEEVLGCDLADRA 72 RLL+TGAAG VG + LR L ++R+ D + A P EEV+ DL D Sbjct: 5 RLLITGAAGEVGSALRELLRGPLGQHFPIIRLTD-NRDLGAARPG---EEVMLADLTDFN 60 Query: 73 AVDAMVAGCEAIIHLGGVSVERPFEEILEANIKGVFHIYEAARRHGVKRVIFASSNHVTG 132 AV ++ G +A+IHL G+ E + I NI G +H+ EAAR+ GV+RV FASS H G Sbjct: 61 AVLKVMQGVDAVIHLAGIPDEDSYANIRAVNIDGTYHVLEAARQAGVRRVAFASSIHTVG 120 Query: 133 FYGQDERIXPP-PIDARDMKRPDGYYGLSKSYGEDMAQFYFDRYGVETVSIRIGSIFPEA 191 FY + E I P P+ RPD YYG+SK +GE + + Y++RYG+E V +RI S P Sbjct: 121 FYPRTEIISPTVPV------RPDTYYGVSKVFGEALGRMYWERYGLEFVGVRICSFQPRP 174 Query: 192 TNRRMLASWMSMDDFEQLLRRSLFIPDVGHTIVYGMSANAKTWWDNRYAAHLGYAPKDSS 251 +RR L++W+S D QL R++ PDVG +V G+S N + W LGY P+D + Sbjct: 175 KDRRHLSTWLSPRDATQLFARAVTAPDVGFLVVAGISGNTRRWMSPEGWDVLGYVPQDDA 234 Query: 252 EIFRAKVE 259 E F A+VE Sbjct: 235 ERFAAEVE 242