BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0204.p (217 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl980GM [E] COG0765 ABC-type amino acid transport system, perme... 245 6e-65 AGc2581 [E] COG0765 ABC-type amino acid transport system, permea... 232 5e-61 SMa0081 [E] COG0765 ABC-type amino acid transport system, permea... 215 5e-56 AGc2569 [E] COG0765 ABC-type amino acid transport system, permea... 198 6e-51 RSc2105 [E] COG0765 ABC-type amino acid transport system, permea... 194 1e-49 >AGl980GM [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 219 Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 163/214 (76%), Gaps = 1/214 (0%) Query: 5 FSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIP 64 F W F F++ ++ WT++L+ +A V GG GF + LAR S + LR A +I+ +QGIP Sbjct: 6 FGWNEFGFLLTALQWTVLLTIIALVGGGIVGFFIALARTSDNKLLRIAAGTYIQVIQGIP 65 Query: 65 LLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLS 124 +L++LF+ Y+GLS+ GL LP L+AAG +M IYTS YL +IWRGC++A+P+ QWEASE L+ Sbjct: 66 VLMILFLSYYGLSLAGLELPPLIAAGASMTIYTSGYLAEIWRGCIQAVPKQQWEASESLA 125 Query: 125 LTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPF 184 LTR Q R VI+PQA R+SLPPT+GF VQ++K TS+AS+IGFVEL RAGQ+INN+ FQPF Sbjct: 126 LTRAQQYRYVILPQAIRISLPPTVGFAVQVVKNTSIASIIGFVELARAGQLINNATFQPF 185 Query: 185 LVFLLVGSFYFLLCYPLSRWSASMERKLNV-SHR 217 VF+ V YF++CYPLS+ S +ER+L+ S+R Sbjct: 186 RVFVAVAVLYFIVCYPLSQLSRWLERRLHAGSNR 219 >AGc2581 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 217 Score = 232 bits (591), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 108/216 (50%), Positives = 158/216 (73%) Query: 2 MGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQ 61 M F W F F+++ GW++VL+A+AF +G G + R+S + +R A +I +Q Sbjct: 1 MSTFGWPEFLFLLRGAGWSIVLTAIAFSIGSLTGGFFAIMRLSQYGSVRNVAAGYITVIQ 60 Query: 62 GIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASE 121 IP+L++LF+ Y+GL+++G +P L+AA +++ +Y SAYL +IWRG ++A+P+PQWEAS Sbjct: 61 SIPVLMILFMSYYGLTLFGFEIPPLLAASVSLSVYVSAYLAEIWRGSIQAVPKPQWEASA 120 Query: 122 CLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIF 181 L+LTR+Q R VI+PQA RLSLPPT+GFLVQL+K TS+ SV+GFVEL+RAGQ++NN+ F Sbjct: 121 SLALTRFQQYRYVILPQALRLSLPPTVGFLVQLVKNTSIVSVVGFVELSRAGQLVNNATF 180 Query: 182 QPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 +PF VF +V YF +C+PLSR S +ER L+V Sbjct: 181 RPFQVFFVVALLYFAICFPLSRLSRHLERVLHVGRN 216 >SMa0081 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 218 Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 108/213 (50%), Positives = 149/213 (69%) Query: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 M+ F W F +V + WT+ LSA+AF G GG LV L R+S LR A FI Sbjct: 1 MIRAFGWNEFLVIVAAAQWTIALSAIAFAGGSVGGLLVALMRVSETRALRLFATGFIRVF 60 Query: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 QG PLL+ LF+V+FG++++G + +AA +A+ ++ SA+LG+IWRGC+EA+P+ Q EA+ Sbjct: 61 QGTPLLMQLFLVFFGMNIFGFAINPWIAATIALALHASAFLGEIWRGCIEAVPKGQREAA 120 Query: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 L L ++++R VI+PQA R+++ PT+GFLVQLIK TSLAS+IGF ELTR GQIINN+ Sbjct: 121 TALGLRYFRSMRHVILPQAARIAVAPTVGFLVQLIKGTSLASIIGFTELTRQGQIINNAT 180 Query: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLN 213 F PFLVF V + YFLLC+PLS + ME + + Sbjct: 181 FSPFLVFGTVAAVYFLLCWPLSLIARRMETRFS 213 >AGc2569 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 219 Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 100/212 (47%), Positives = 151/212 (71%) Query: 6 SWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIPL 65 +W ++ + WT++LS ++F GG L++ RIS +R A ++E QG PL Sbjct: 6 TWDILRNLLLATRWTVLLSLVSFAGGGLVALLLLFMRISRKKSMRVFARYYVELFQGTPL 65 Query: 66 LILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLSL 125 L+ LFI +FGL + G+ +PA +AAGL ++++ +A+L +IWRGCVE++ + QWEAS L++ Sbjct: 66 LMQLFIAFFGLGLVGIDVPAWLAAGLTLILWAAAFLTEIWRGCVESVAKGQWEASASLAM 125 Query: 126 TRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPFL 185 R Q +R VI+PQA R+++PPT+GF VQ+IK T++ S+IGFVEL++AG ++ N+ FQPF Sbjct: 126 GRLQQMRYVILPQAMRVAIPPTVGFFVQVIKGTAVTSIIGFVELSKAGTVVTNATFQPFT 185 Query: 186 VFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 V+ LV YF LC+PLS+ S +ERKLNV+HR Sbjct: 186 VYGLVALIYFALCWPLSKSSQILERKLNVAHR 217 >RSc2105 [E] COG0765 ABC-type amino acid transport system, permease component Rso Ralstonia solanacearum Length = 217 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 90/187 (48%), Positives = 137/187 (73%) Query: 26 LAFVLGGAGGFLVMLARISPHAWLRRPAILFIECVQGIPLLILLFIVYFGLSVYGLVLPA 85 +AF LGGA G V+ AR+ +A L+R + ++I+ Q PLL+ +F+V+FG S+ GL + Sbjct: 27 MAFALGGAAGLAVLFARVGRNAGLQRVSQVYIQIFQNTPLLMQMFLVFFGASMAGLEMSP 86 Query: 86 LVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLVIIPQATRLSLP 145 AA + + +YTSAYL ++WRGCVEA+PR QWEAS L++ +Q +R V++PQA R+S+ Sbjct: 87 WTAAAIGLTLYTSAYLAEVWRGCVEAIPRGQWEASASLAMGYFQQMRHVVLPQAVRMSIA 146 Query: 146 PTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPFLVFLLVGSFYFLLCYPLSRWS 205 PT+GF VQ++K T++AS+IGF +LT+ G ++ N+ FQPFL++ LVG Y LC+PLS + Sbjct: 147 PTVGFSVQIVKGTAVASIIGFEDLTKLGSVLANATFQPFLIYGLVGMAYLALCWPLSLCA 206 Query: 206 ASMERKL 212 + +E+KL Sbjct: 207 SHLEKKL 213