BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0164.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0479 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   111   4e-25
AGc4564 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...   103   8e-23
SMa0097 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ...   102   2e-22
STM0764 [K] COG0583 Transcriptional regulator Sty Salmonella typ...    80   1e-15
PA5428 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    76   2e-14

>RSc0479 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 314

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 66/88 (75%)

Query: 1  MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60
          ME+KW+EDF+S+ ET +FSRSA+LR+VTQPAF RRI+SLE WLG EL DRSSYP  LT A
Sbjct: 1  MELKWLEDFISLAETRSFSRSAELRHVTQPAFSRRIQSLEAWLGNELIDRSSYPTRLTPA 60

Query: 61 GESFVPIAKEMLNQSMQARLVLRGQXNA 88
          GE F   A  ML Q  + R ++RGQ  A
Sbjct: 61 GEVFYEQALAMLAQVSETRALMRGQRPA 88


>AGc4564 [K] COG0583 Transcriptional regulator Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 306

 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 64/89 (71%)

Query: 1  MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60
          +E+KW+EDFL++  TLNFS++A  R+VTQ AF RRI+ LE W+GA L DR+SYP  LT+A
Sbjct: 9  LEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRASYPSRLTEA 68

Query: 61 GESFVPIAKEMLNQSMQARLVLRGQXNAE 89
          G  FVP+A+E L Q   AR  L  +  A+
Sbjct: 69 GAKFVPVAQETLKQLYHARRTLLQEEGAD 97


>SMa0097 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 313

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 64/83 (77%)

Query: 1  MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60
          MEIKW+EDF+++ +T +FSR+A+LRNVTQPAF RRI+ LE+WLGA L  R++ P  LT A
Sbjct: 1  MEIKWLEDFVTLADTSSFSRAAELRNVTQPAFSRRIKQLESWLGATLISRATMPAELTPA 60

Query: 61 GESFVPIAKEMLNQSMQARLVLR 83
          G +F+P+A+E +     AR VLR
Sbjct: 61 GRNFLPVAQEAIRTFYAAREVLR 83


>STM0764 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium
          LT2
          Length = 327

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 53/73 (72%)

Query: 1  MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60
          +E+ W+ED L++ ETLNFS+++  R VTQPAF RRI+SLE W+G  LF+RS    TLT+A
Sbjct: 26 LELTWLEDCLALKETLNFSKASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGVTLTKA 85

Query: 61 GESFVPIAKEMLN 73
          GE F     E+++
Sbjct: 86 GEVFTDQLPELIH 98


>PA5428 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 302

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 54/77 (70%)

Query: 1  MEIKWVEDFLSVVETLNFSRSAKLRNVTQPAFGRRIRSLETWLGAELFDRSSYPCTLTQA 60
          +E+KW+EDF+++  T +FS++A+ R VTQPAF RRIRSLE  LG  L +R   P  LT+A
Sbjct: 3  LELKWLEDFIALAGTRSFSQAAEKRFVTQPAFSRRIRSLEDALGLTLVNRQRTPVELTEA 62

Query: 61 GESFVPIAKEMLNQSMQ 77
          G+ F+  A+ ++ Q  Q
Sbjct: 63 GQLFLVTARSVVEQLGQ 79