BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0163.p (214 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0479 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 156 3e-38 PA5428 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 91 3e-18 AGc4564 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 90 3e-18 SMa0097 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 75 1e-13 STM0764 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 71 2e-12 >RSc0479 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 314 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 118/193 (61%), Gaps = 6/193 (3%) Query: 1 MPHTLLLTVFPKLLSEIEKSIGAISTTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIAL 60 +PHTL LT FP L+++E+ IG + + A NVHDAVM LV+ CDL++ Y H +Q I L Sbjct: 97 VPHTLSLTFFPGWLAKVEEKIGKLQCRLRALNVHDAVMTLVDGGCDLVMVYHHARQMIQL 156 Query: 61 DTERYDVLSLGKEPLRPYVKTLPNGLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHS 120 D RYD+L LG E L P+ K G P Y L A P +LSY+P + L R+V+ L + Sbjct: 157 DPTRYDMLVLGTERLSPFSKPDVGGRPIYKLTPAARKPIAYLSYTPNAFLGRMVDVLLEN 216 Query: 121 SPRQVHLFRRFETDLAEGLKSMAVEGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQ 180 SP L + +ETD+AE LK MA+ GHG+A+LP SAV ++A G+L A E Sbjct: 217 SPVAPLLDKCYETDMAEALKVMALAGHGVAFLPESAVRDDVAAGRLVRA------EGKGG 270 Query: 181 GLWCDEMDIRVYR 193 G EM+IR+YR Sbjct: 271 GTLSIEMEIRLYR 283 >PA5428 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 302 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 13/212 (6%) Query: 3 HTLLLTVFPKLLSEIEKSIGAISTTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDT 62 H+L L FP+ ++ + I++ ++A NV +AV +L E +CDL+L + + +D Sbjct: 101 HSLALGFFPQWIARLRNEGLNIASRLIATNVGEAVHSLREGSCDLMLAFYDPDAALQMDP 160 Query: 63 ERYDVLSLGKEPLRPYVKTLPNGLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHSSP 122 E + L LG+ + P G P + L + P L+YS + L R V L Sbjct: 161 EIFPSLHLGRTEMLPVCAVNAEGQPLFDLENGQS--VPLLAYSASAFLGRGVNLLLRQ-- 216 Query: 123 RQVHLFRRFETDLAEGLKSMAVEGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQGL 182 R + +ET +A+ LKSMA++G G+AW+P +V E+ G+L + P Sbjct: 217 RNLRYTTVYETAMADSLKSMALQGMGVAWVPRLSVVNELERGELAICGGPQ--------- 267 Query: 183 WCDEMDIRVYRRLDGANPDIDRIWNYLKAEHG 214 W +IR+YR I +W L+ G Sbjct: 268 WFVPQEIRLYRCALVRKAAIRLLWRKLEGGLG 299 >AGc4564 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 306 Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 100/210 (47%), Gaps = 13/210 (6%) Query: 3 HTLLLTVFPKLLSEIEKSIGAISTTVM--AGNVHDAVMALVERNCDLLLCYDHRQQGIAL 60 HTL T FP L + + G + + + +G++ + + +LV+ D LL Y H + + L Sbjct: 107 HTLSFTFFPDWLKRVNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHHEVPMLL 166 Query: 61 DTERYDVLSLGKEPLRPYVKTLPNGLPKYVLPGAPNDPQPFLSYSPYSSLSRIVEKALHS 120 D + ++ LG E + P +G P + L P +L Y S ++ L Sbjct: 167 DAQLFEFRVLGAENIIPVSAPTQDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLL-- 224 Query: 121 SPRQVHLFRRFETDLAEGLKSMAVEGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQ 180 S R R E ++ GLK+MA+ G G+AW+P S + +E+ G L A P+ Sbjct: 225 SARLPQYERVHEGSMSVGLKAMAMAGWGVAWVPESLMRQELDSGALVRAADPS------- 277 Query: 181 GLWCDEMDIRVYRRLDGANPDIDRIWNYLK 210 + +DIR+YR + P ++RIW L+ Sbjct: 278 --FDITVDIRLYRSKENRRPVVERIWAVLE 305 >SMa0097 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 313 Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 19/214 (8%) Query: 3 HTLLLTVFPKLLSEIEKSIGAISTTVMA--GNVHDAVMALVERNCDLLLCYDHRQQGIAL 60 HTL +T FP+ L +E + G+ ST+++ G + + ALV D L Y H + L Sbjct: 97 HTLTVTFFPRWLKTLEAAGGSFSTSLIPDRGGIEANLDALVGDEADFFLTYAHPEVPFHL 156 Query: 61 DTERYDVLSLGKEPLRPYV--KTLPNGLPK---YVLPGAPNDPQ---PFLSYSPYSSLSR 112 D+ ++ L++ + L P V + + +G P+ +L A P+ P+LSY ++S Sbjct: 157 DSGQFSSLTVAHDRLIPLVAAEIVLSGDPQPGLNLLDRAIAQPRLAIPYLSYG-FNSFFG 215 Query: 113 IVEKALHSSPRQVHLFRRFETDLAEGLKSMAVEGHGIAWLPASAVAREIAEGKLTLAIAP 172 + L E ++ GL +MAV G G+ WLP S EI +L A A Sbjct: 216 VALSRLLLRRPPFRRRTTHENTISAGLMNMAVTGAGVCWLPESLAREEIDARRLVPASA- 274 Query: 173 TDSEALEQGLWCDEMDIRVYRRLDGANPDIDRIW 206 ++G W +++IR+YR N ++ +W Sbjct: 275 ------DEG-WNLDLEIRLYRHAASRNRKVEELW 301 >STM0764 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 327 Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 10/212 (4%) Query: 3 HTLLLTVFPKLLSEIEKSIGAISTTVMAGNVHDAVMALVERNCDLLLCYDHRQQGIALDT 62 H L + P LL + +K S +++ +++ + + + LLC+ H + L+ Sbjct: 124 HALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKMMRQGDSQFLLCHHHPHMHLNLNK 183 Query: 63 ERYDVLSLGKEPLRPYVKTLPNGLPKYVLPGAPNDPQ-PFLSYSPYSSLSRIVEKALHSS 121 + + LG + L P+ K P+ L N Q P+LS+S S L RI+ + Sbjct: 184 NNFMSIRLGFDTLIPFSK--PDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASIN 241 Query: 122 PRQVHLFRRFETDLAEGLKSMAVEGHGIAWLPASAVAREIAEGKLTLAIAPTDSEALEQG 181 ++ F DLA L +M G G+AW+P S +AR+ E K + A +S Sbjct: 242 RITHNINVAFVADLAATLLAMVRSGDGVAWIPQS-LARQDIEAKTIVTAAEKES-----N 295 Query: 182 LWCDEMDIRVYRRLDGANPDIDRIWNYLKAEH 213 LW ++IR+YR PD + +W E Sbjct: 296 LWVP-IEIRLYRPAKRMPPDAEELWEIFVEEQ 326