BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0140.p (435 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02873 [G] COG1653 ABC-type sugar transport system, periplasmi... 477 e-134 mlr4771 [G] COG1653 ABC-type sugar transport system, periplasmic... 457 e-128 VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic... 427 e-119 BMEII0754 [G] COG1653 ABC-type sugar transport system, periplasm... 273 7e-73 BMEII0755 [G] COG1653 ABC-type sugar transport system, periplasm... 166 9e-41 >SMc02873 [G] COG1653 ABC-type sugar transport system, periplasmic component Sme Sinorhizobium meliloti Length = 419 Score = 477 bits (1227), Expect = e-134, Method: Compositional matrix adjust. Identities = 228/415 (54%), Positives = 292/415 (70%), Gaps = 3/415 (0%) Query: 22 RPLLAACALALS-LGSLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGITVKFS 80 R + LA S LGS A +Q TLTIESWR DDL +WQE LIPAF+ NPGI V F+ Sbjct: 3 RTTMKGLLLASSILGSAGLAQAQDATLTIESWRNDDLAIWQEKLIPAFEAKNPGIKVVFA 62 Query: 81 PTAPTEYDSSLAARMAGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAPAAKAA 140 P+APTEY+++L A++ G+AGDL+ CRPFD SL LYNK HL L G GME F+ AK+A Sbjct: 63 PSAPTEYNAALNAKLDAGSAGDLITCRPFDASLELYNKKHLADLTGLSGMENFSDVAKSA 122 Query: 141 WQTDDGRDTFCMPMASVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTVKANGKYAPLVM 200 W TDDG+ TFC+PMASVIHGF YN F +L L P TE EFF +L+ +KA+G Y P+ M Sbjct: 123 WTTDDGKATFCVPMASVIHGFIYNKDAFDQLGLSVPATEEEFFAVLEKIKADGNYIPMAM 182 Query: 201 GTAEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKYLPKGA 260 GT + WE+ + + +IGPNYWKGEEGR AL+ G+ K TD +V + AK YL G Sbjct: 183 GTKDLWEAATMGYQNIGPNYWKGEEGRLALLKGEQKLTDEPWVEPFRVLAKWKDYLGDGF 242 Query: 261 SAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDF--AAFPPPVPKNGDACYISDHNDI 318 AQTY DSQN+F LG+ A+YPAGSW+I+ FN + +F AFPPPV K GD CYISDHNDI Sbjct: 243 EAQTYPDSQNLFTLGRAAIYPAGSWEISGFNTQAEFKMGAFPPPVKKAGDTCYISDHNDI 302 Query: 319 GMGINKKSKNKEDAYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMGWRK 378 G+G+N KSKN + A FL W+ S EFA++Y N + GFFSL++ + + DP+A++ + WR+ Sbjct: 303 GIGLNAKSKNADAAKTFLTWVASPEFAEIYANALPGFFSLNSTAVKMSDPLAQEFVSWRE 362 Query: 379 NCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKMTPQDAATKIQSGFAKWYKP 433 C TIR QIL+RGTP++ENE W ++A V+NG TP+ AA K+Q G W+KP Sbjct: 363 KCKPTIRSTYQILSRGTPNLENETWVMSANVINGTDTPEAAAKKLQDGLDSWFKP 417 >mlr4771 [G] COG1653 ABC-type sugar transport system, periplasmic component Mlo Mesorhizobium loti Length = 419 Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/404 (54%), Positives = 286/404 (70%), Gaps = 2/404 (0%) Query: 34 LGSLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSLAA 93 LGS A ++ TL IESWR DDL +W++ LIPAF+ NPGI V F+P+APTEYD++L A Sbjct: 16 LGSAGLAHAEDVTLNIESWRGDDLAIWKDKLIPAFEAKNPGIKVVFAPSAPTEYDAALGA 75 Query: 94 RMAGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAPAAKAAWQTDDGRDTFCMP 153 ++A G+AGDL+ CRPFD SL LY KG+L L PGME F+P AK+AWQTDDG+ +FC+P Sbjct: 76 KLAAGSAGDLITCRPFDKSLELYKKGNLADLSALPGMENFSPVAKSAWQTDDGKASFCVP 135 Query: 154 MASVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTVKANGKYAPLVMGTAEQWESHQVLF 213 MASVIHGF YN F +L ++ P T EFF LD +KA+G Y P+ MGT + WE+ + + Sbjct: 136 MASVIHGFIYNKDAFDKLGIKVPTTRDEFFAALDKIKADGTYIPMAMGTKDLWEAATMGY 195 Query: 214 TSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKYLPKGASAQTYSDSQNMFA 273 +IGPNYWKGE+GR+ALI G K TD +VA + AK YL G AQTY DSQN+F Sbjct: 196 QNIGPNYWKGEDGRQALIKGTQKLTDKDWVAPYEELAKWKPYLGDGFEAQTYPDSQNLFT 255 Query: 274 LGKGAVYPAGSWDIAYFNGKMDF--AAFPPPVPKNGDACYISDHNDIGMGINKKSKNKED 331 LG+ A+YPAGSW+I FN + F AFPPPV K GD CYISDH DIGMG+N SK+ + Sbjct: 256 LGRAAIYPAGSWEIGLFNTQAQFKMGAFPPPVEKAGDTCYISDHTDIGMGLNAASKHADA 315 Query: 332 AYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMGWRKNCASTIRVNSQIL 391 A FL+W+ S +FA +Y N + GFFSL++ + + DP+A++ + WR C STIR QIL Sbjct: 316 AKTFLSWVASPDFATIYANALPGFFSLNSSPVKMADPLAQEFVSWRGKCKSTIRSTYQIL 375 Query: 392 NRGTPSMENEMWNVNAQVLNGKMTPQDAATKIQSGFAKWYKPQQ 435 +RGTP++ENE W +A V+NG TP+ AA K+Q+G WYKP + Sbjct: 376 SRGTPNLENETWVESANVINGTDTPEAAAKKLQTGLDSWYKPAK 419 >VCA1033 [G] COG1653 ABC-type sugar transport system, periplasmic component Vch Vibrio cholerae Length = 458 Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/403 (50%), Positives = 262/403 (65%) Query: 33 SLGSLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSLA 92 +LG L + A L IESWR DD LW++ +IPAF+ +NPGI VKF+P Y +L Sbjct: 8 ALGLLLSGQLMASELVIESWRADDKALWEQKIIPAFEAANPGIKVKFNPVPNVNYTPTLW 67 Query: 93 ARMAGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAPAAKAAWQTDDGRDTFCM 152 + G AGDL+ CRPFD SL+L+ GHL ++ GME F A+A WQTD G TFC+ Sbjct: 68 ENLKAGKAGDLITCRPFDDSLALFKAGHLAEITEMAGMENFPSFAQAPWQTDSGAQTFCV 127 Query: 153 PMASVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTVKANGKYAPLVMGTAEQWESHQVL 212 PMASVIHGFFYN KIF EL L P+T +FF +LD VKA+G+Y PL M +E W + ++ Sbjct: 128 PMASVIHGFFYNKKIFNELGLSVPQTREQFFTVLDKVKADGRYIPLSMSGSESWVASELG 187 Query: 213 FTSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKYLPKGASAQTYSDSQNMF 272 + +IGPNYWKGE+GR ALI G+ D Q+V + A+ YL + + Y S +F Sbjct: 188 YQNIGPNYWKGEDGRLALINGQEHLDDSQYVKVFEELARWRAYLGEDGELRDYGTSNELF 247 Query: 273 ALGKGAVYPAGSWDIAYFNGKMDFAAFPPPVPKNGDACYISDHNDIGMGINKKSKNKEDA 332 GK A+Y AGSW+IA F K+DF PPV K GD C+ +DH DIGMG+N SKN + A Sbjct: 248 TSGKAALYVAGSWEIAPFTDKVDFGVMRPPVAKQGDGCFFTDHTDIGMGMNPASKNPQAA 307 Query: 333 YKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMGWRKNCASTIRVNSQILN 392 FL WL + EFA+LYTN + GFFSLSNH V +P A++MM WR C STIRV +QIL+ Sbjct: 308 MAFLQWLTTPEFAELYTNSLPGFFSLSNHFFDVTNPAAREMMEWRDQCDSTIRVATQILS 367 Query: 393 RGTPSMENEMWNVNAQVLNGKMTPQDAATKIQSGFAKWYKPQQ 435 RG P + +E+ V+ VL GKMTP AA +++ G +WY P Q Sbjct: 368 RGQPKLGDELAEVSQAVLVGKMTPTAAAERLEQGLKRWYAPHQ 410 >BMEII0754 [G] COG1653 ABC-type sugar transport system, periplasmic component Bme Brucella melitensis Length = 240 Score = 273 bits (697), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 165/238 (69%), Gaps = 2/238 (0%) Query: 198 LVMGTAEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKYLP 257 + MGT + WE+ + + +IGP YWKGEEGRKALIAGK K TDP++V + AK YL Sbjct: 1 MAMGTKDMWEAATMGYQNIGPTYWKGEEGRKALIAGKEKLTDPEWVEPFKVLAKWKDYLG 60 Query: 258 KGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDF--AAFPPPVPKNGDACYISDH 315 G AQTY DSQN+F LG+ A+YPAGSW+I FN + F AFPPPV GD CYISDH Sbjct: 61 DGFEAQTYPDSQNLFTLGRAAIYPAGSWEIGLFNTQAQFKMGAFPPPVKNAGDTCYISDH 120 Query: 316 NDIGMGINKKSKNKEDAYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMG 375 NDIG+G+N SKN E A FL W+ S EFA++Y N + GFFSL++ + + DP+A++ + Sbjct: 121 NDIGLGLNAASKNAEQAKVFLNWVASPEFAEIYANALPGFFSLNSTAVKMADPLAQEFVS 180 Query: 376 WRKNCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKMTPQDAATKIQSGFAKWYKP 433 WR+ C TIR QIL+RGTP++ENE W +A V+NG TP +A K+Q+G WYKP Sbjct: 181 WREKCKLTIRSTYQILSRGTPNLENETWVESANVINGTDTPDEAGKKLQAGLDSWYKP 238 >BMEII0755 [G] COG1653 ABC-type sugar transport system, periplasmic component Bme Brucella melitensis Length = 139 Score = 166 bits (420), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 2/133 (1%) Query: 32 LSLGSLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSL 91 L+ GS+A A + TLT+ESWR DDL +WQE +IPAF+ +PGI + F+P+APTEY+ +L Sbjct: 8 LATGSVAFA--EDVTLTVESWRNDDLQIWQEKIIPAFEAKHPGIKINFAPSAPTEYNVAL 65 Query: 92 AARMAGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAPAAKAAWQTDDGRDTFC 151 A++ G+ GDL+ACRPFD SL L+NKG L L GM+ F+ AK+AW TDDG TFC Sbjct: 66 NAKLDAGSGGDLIACRPFDTSLELFNKGKLADLTDLEGMKNFSDVAKSAWTTDDGSKTFC 125 Query: 152 MPMASVIHGFFYN 164 +PMASVIHGF YN Sbjct: 126 VPMASVIHGFIYN 138