BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0126.p         (232 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN1406 [E] COG2986 Histidine ammonia-lyase Fnu Fusobacterium nuc...   129   5e-30
BS_hutH [E] COG2986 Histidine ammonia-lyase Bsu Bacillus subtilis     120   2e-27
VNG1212Gm [E] COG2986 Histidine ammonia-lyase Hbs Halobacterium ...   116   4e-26
YPO4016 [E] COG2986 Histidine ammonia-lyase Ype Yersinia pestis       114   1e-25
BH1982 [E] COG2986 Histidine ammonia-lyase Bha Bacillus halodurans    114   2e-25

>FN1406 [E] COG2986 Histidine ammonia-lyase Fnu Fusobacterium nucleatum
          Length = 511

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 97/154 (62%), Gaps = 3/154 (1%)

Query: 4   ITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFNTGV 63
           I I+G NLT   VV+VAR    KV L +  +  + +SR Y+E   + ++ P+ Y  NTG 
Sbjct: 5   IEINGSNLTIEDVVAVARYGA-KVKLDEKQKDKILESRKYVEEA-LSNKMPI-YGINTGF 61

Query: 64  GLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRVEVV 123
           G  ++  I  E +EL Q  LI + + G+GEAF  E+ RA M+LRANA +  +S   +E V
Sbjct: 62  GKFENVPISEEELELLQKNLIYSDACGVGEAFDTEIVRAMMILRANAISKGFSGVMIETV 121

Query: 124 DRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLA 157
           + LL  +NAG+HPI+  KGSVG+SGDL PLA++ 
Sbjct: 122 ECLLNMLNAGVHPIVRSKGSVGSSGDLCPLAHMV 155


>BS_hutH [E] COG2986 Histidine ammonia-lyase Bsu Bacillus subtilis
          Length = 508

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 3/156 (1%)

Query: 4   ITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFNTGV 63
           +T+DG +LT A V  V      + A ++ S   +K+SR  +E   + DE   +Y  NTG 
Sbjct: 2   VTLDGSSLTTADVARVLFDFE-EAAASEESMERVKKSRAAVERI-VRDE-KTIYGINTGF 58

Query: 64  GLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRVEVV 123
           G   D  I+ E     Q  LI +H+ G+G+ F E VSRA +LLRANA    +S  R E++
Sbjct: 59  GKFSDVLIQKEDSAALQLNLILSHACGVGDPFPECVSRAMLLLRANALLKGFSGVRAELI 118

Query: 124 DRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAA 159
           ++LLAF+N  +HP++PQ+GS+GASGDLAPL++LA A
Sbjct: 119 EQLLAFLNKRVHPVIPQQGSLGASGDLAPLSHLALA 154


>VNG1212Gm [E] COG2986 Histidine ammonia-lyase Hbs Halobacterium sp. NRC-1
          Length = 518

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 94/154 (61%), Gaps = 7/154 (4%)

Query: 6   IDGFNLTAAQVVSVAR--APHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFNTGV 63
           +DG +LT A V +VAR  AP   V++A  +R A+++SR  I      DEA  +Y  NTG 
Sbjct: 1   MDGESLTPAAVDAVARHDAP---VSIAAGAREAVRESRARIADVLGGDEA--VYGVNTGF 55

Query: 64  GLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRVEVV 123
           G + DTRI     E  Q  L+R+H+AG G        RA ++ R NA A  YS  R  V+
Sbjct: 56  GSMSDTRIDAADREALQANLVRSHAAGAGSELDTAAVRALLVTRLNALAKGYSGIRERVL 115

Query: 124 DRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLA 157
           D L+  +N G+HP++P +GS+GASGDLAPLA+++
Sbjct: 116 DVLVGLLNEGVHPVVPSRGSLGASGDLAPLAHMS 149


>YPO4016 [E] COG2986 Histidine ammonia-lyase Ype Yersinia pestis
          Length = 510

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 3/157 (1%)

Query: 1   MSTITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN 60
           M TIT+    +T A +  + + P + + L +S+   ++QS D +++     E    Y  N
Sbjct: 1   MKTITLRPGQMTLADLRHIYQHP-VHITLDESAYVPIQQSVDCVQAILA--EQRTAYGIN 57

Query: 61  TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRV 120
           TG GLL  TRI  E +E  Q  ++ +H+AG+GEA  + + R  M+L+ N+ A  +S  R+
Sbjct: 58  TGFGLLASTRIATEDLENLQRSIVLSHAAGVGEANDDAIVRLIMVLKINSLARGFSGIRL 117

Query: 121 EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLA 157
           EV+  L+  +NAG++P +P KGSVGASGDLAPLA+++
Sbjct: 118 EVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMS 154


>BH1982 [E] COG2986 Histidine ammonia-lyase Bha Bacillus halodurans
          Length = 511

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 83/131 (63%), Gaps = 2/131 (1%)

Query: 27  VALADSSRAALKQSRDYIESTWMHDEAPMMYSFNTGVGLLKDTRIKVEHIELFQTQLIRA 86
           V  +D S   +KQSR  +E   + DE  ++Y   TG G   D  I  + +E  Q  LI +
Sbjct: 27  VGASDESMEKVKQSRKAVEQI-VADE-KIIYGITTGFGKFSDIFIDPDDVENLQHNLIYS 84

Query: 87  HSAGIGEAFSEEVSRATMLLRANAFASNYSAPRVEVVDRLLAFINAGIHPIMPQKGSVGA 146
           H+ G+G  F E VSR  ++LRANA    +S  R  V++RLLA +NA IHP++PQ+GS+GA
Sbjct: 85  HACGVGSPFPETVSRTMLVLRANALLKGFSGVRPLVIERLLALVNANIHPVIPQQGSLGA 144

Query: 147 SGDLAPLAYLA 157
           SGDLAPL++LA
Sbjct: 145 SGDLAPLSHLA 155