BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0122.p (458 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0757 [T] COG0642 Signal transduction histidine kinase Pae Pseu... 300 4e-81 STM2784 [T] COG0642 Signal transduction histidine kinase Sty Sal... 251 2e-66 RSc0549 [T] COG0642 Signal transduction histidine kinase Rso Ral... 249 8e-66 mll7952 [T] COG0642 Signal transduction histidine kinase Mlo Mes... 231 3e-60 RSc2936 [T] COG0642 Signal transduction histidine kinase Rso Ral... 226 1e-58 >PA0757 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas aeruginosa Length = 460 Score = 300 bits (769), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 185/389 (47%), Positives = 244/389 (62%), Gaps = 16/389 (4%) Query: 33 SVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVTADVPYVALDSFETDNLGRIYYKV 92 S Y+N EVAD AYDR+LLAS RA+A+ + DG + ADVPYVALD+F D+ GRI+Y+V Sbjct: 29 SAYWNGREVADTAYDRTLLASARAIADGLYEKDGTLRADVPYVALDTFAYDSAGRIFYQV 88 Query: 93 TGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAALLQPVYDDSIRGI 152 ++G ++SGY++LP P D R++ YPAL +FY Y VR+ +LLQPV + S+ G+ Sbjct: 89 NDIHGRMISGYENLPAAPADTLRTDDYPALAKFYDGVYQGVDVRVVSLLQPVSEPSMSGM 148 Query: 153 ALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQLKGEVESRA 212 A I+V ET R M R ++ DTL R G L A +LVW AV LRPL +L+ EVE R Sbjct: 149 AEIRVAETEGARERMARSLMTDTLLRLGVLGVGALVLVWLAVSAALRPLDRLRREVEERQ 208 Query: 213 PTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVLKTQSE 272 P DL V E+RPLV+++N + RL++L Q FIADA+H+LRTPL LK + E Sbjct: 209 PDDLRPLPMLEVQHELRPLVESLNHFTQRLRSLFERQSHFIADAAHELRTPLAALKARLE 268 Query: 273 LTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGA---AEGGTMPLSL 329 L LRE E R +E A+ TD +HLAN+LL+LAR E GA AEGG + L Sbjct: 269 LGLREQEPEA-----WRSTLETTAKNTDRLIHLANQLLSLARIESGAQAIAEGGAERIDL 323 Query: 330 SDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLLHELMVNLLDNAIRYTPAGGHV 389 + AR++ L L+ A +R LA E G V I+ LL+EL+ NLLDNA+ +TP GG+V Sbjct: 324 TALARELGLALAPLAYARGASLALESAGPVWIQGEPTLLNELLSNLLDNALAHTPQGGNV 383 Query: 390 TLRVRAQSHPGQPTVALLEVEDSGPGIPS 418 LRV +LEVED GPGIP+ Sbjct: 384 ILRVLEG--------GVLEVEDDGPGIPA 404 >STM2784 [T] COG0642 Signal transduction histidine kinase Sty Salmonella typhimurium LT2 Length = 471 Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 160/399 (40%), Positives = 229/399 (57%), Gaps = 12/399 (3%) Query: 28 AVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVTADVPYVALDSFETDNLGR 87 + A + Y NAL+ A AYDR+LL+S R ++ER+ V + H+ +VP+V LDSFE + R Sbjct: 26 GLSAFNSYVNALQAATQAYDRTLLSSARTVSERLVVRNNHLEVNVPWVVLDSFELNMNDR 85 Query: 88 IYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAALLQPVYDD 147 +YYKV +G+++SGYDDLP +PP R+ +YPAL FY +Y + +R+A LLQPV + Sbjct: 86 LYYKVVDPSGKVISGYDDLPVMPPATPRTRLYPALAWFYHTEYRGEAIRVARLLQPVNEG 145 Query: 148 SIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQLKGE 207 I G+A I V ET++ R + ++LF + QG LV + +LV + +R +LRP+ QL Sbjct: 146 GIIGMAEIYVAETLQSRRYLAGQLLFSSWISQGLLVLLTLVLVGWLLRRILRPMRQLSSL 205 Query: 208 VESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVL 267 + R P L+ L E R L+ A N Y+ RL+ ++S Q RF ADASHQL+TPL VL Sbjct: 206 MVRREPGLLTPLPELLPWSETRLLIVAFNRYIDRLRGILSRQERFSADASHQLKTPLAVL 265 Query: 268 KTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHG-AAEGGTMP 326 KTQ+ + L + ++ M+ T D+ + L RLL L+ +H E P Sbjct: 266 KTQAAVAL-----ASQHPHHWYESLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSP 320 Query: 327 LSLSDAARQVALELSQQAVSREIGLAFEEEGD-VSIEANALLLHELMVNLLDNAIRYTPA 385 ++L D + QA S+ I L +E E + + IE + +LL EL NLLDNA++YTP Sbjct: 321 VNLYDIVQSGCFTRLAQARSKHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPE 380 Query: 386 GGHVTLRVRAQSHPGQPTVALLEVEDSGPGIPSTSIRAA 424 G VT R+ L VEDSGPGI I A Sbjct: 381 QGIVTARLERDG-----DAVTLVVEDSGPGIDDEHIHLA 414 >RSc0549 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 513 Score = 249 bits (637), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/410 (38%), Positives = 235/410 (57%), Gaps = 15/410 (3%) Query: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 SL +++ W+L PL LL + Y A +A+ YDR+L +S L++++ V+G VT Sbjct: 46 SLFGEILDWMLAPLLLLWPMSIAVTYLVAKSIANAPYDRALESSAIVLSQQLHEVNGRVT 105 Query: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 +P A + D IYY+V G +GE VSG DLP +PP+ +LV+ Sbjct: 106 LQLPISAREILRADETDNIYYQVLGSSGEFVSGDRDLP-LPPEEDAGA--GSLVQLRDDR 162 Query: 130 YHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 H +R+A V R AL+QV ET++ R + +I+ + Q ++ +A +L Sbjct: 163 IHGAEIRVAYTY--VQQPGARP-ALVQVAETLDKRAQLANEIIKGVILPQFVILPLAVIL 219 Query: 190 VWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQ 249 VWF + L PL ++ + +R+P D S D +E+ PLV + N +GRL+ + Q Sbjct: 220 VWFGLTRGLAPLNAIQERIRARSPGDTSPIDEGAAPQELTPLVASFNELLGRLEQSVQTQ 279 Query: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRL 309 +RFIADA+HQ++TPL L+ Q+EL RE + ELR + +A +++ HL +L Sbjct: 280 KRFIADAAHQMKTPLAGLRMQAELAQREQSPD-----ELRRTLAHIADSSERTAHLVKQL 334 Query: 310 LTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEG-DVSIEANALLL 368 L+LAR E+ A G +PL L +RQV E +A +++I L FEE G V+ NA +L Sbjct: 335 LSLARMENMGAADGMVPLDLCALSRQVVAEWLPKAWAKQIDLGFEEPGAPVTTSGNATML 394 Query: 369 HELMVNLLDNAIRYTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGIPS 418 E++ NLLDNAIRYTP GGHVT+RV + P +P V L+VED+GPGIP+ Sbjct: 395 AEMLNNLLDNAIRYTPDGGHVTVRV--TTAPFEPFV-FLDVEDTGPGIPA 441 >mll7952 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 452 Score = 231 bits (589), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 151/411 (36%), Positives = 229/411 (55%), Gaps = 21/411 (5%) Query: 7 RLGSLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDG 66 ++ SLR QL+ W+++PL L ++ + + +AL A+L DR LL S R +AE+V++ DG Sbjct: 2 KINSLRLQLLAWVVLPLAGLATINLWTSHGSALATANLVTDRMLLGSARTIAEQVAMNDG 61 Query: 67 HVTADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFY 126 + A +P A++ F+T + +YY V G L++GY +LP + P+ Sbjct: 62 VLDATIPPAAIEMFDTGDRDSVYYHVKTARGRLLTGYPNLP--------EALTPS---ST 110 Query: 127 QADYHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVA 186 +A Y D +R+ Q V + VG T+ G + M R++ F +Q LV +A Sbjct: 111 EATYRDHRLRLLTFSQGVVGAGEDSPISVTVGVTLAGHDAMVRRLWFGAFAQQLALVAIA 170 Query: 187 ALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALI 246 L V + L PL++L+ V S +DL + E+RPL+ A+N YM R++A + Sbjct: 171 GLFVLLGLHRGLAPLIRLRDAVRSPNRSDLDPVEVPGAQSEIRPLIDALNAYMARVRAQM 230 Query: 247 SAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLA 306 ++QRRF+A+A+HQLRTPL +L TQ+ L RE V A LV A + A LA Sbjct: 231 ASQRRFVANAAHQLRTPLALLSTQASYAL----RETVPDARHEALVALQASSGRLA-RLA 285 Query: 307 NRLLTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANAL 366 +LLTL+RAE G+ + L++AARQV + AVSR + L EE G V + + Sbjct: 286 EQLLTLSRAEPGSRRPRADRVDLTEAARQVLETHAPIAVSRNVDLGLEEAGPVPVIGDGT 345 Query: 367 LLHELMVNLLDNAIRYTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGIP 417 +L E++VNL+DNA+RY+ +GG VT+R+ A A+L V D GPGIP Sbjct: 346 MLREMIVNLVDNALRYSSSGGSVTVRLAAVDGE-----AVLTVTDDGPGIP 391 >RSc2936 [T] COG0642 Signal transduction histidine kinase Rso Ralstonia solanacearum Length = 500 Score = 226 bits (575), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/395 (36%), Positives = 210/395 (53%), Gaps = 21/395 (5%) Query: 28 AVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVTADVPYVALDSFETDNLGR 87 A+D +S Y + D AYDR+LL S RA+ V++ G V +VPYVAL FE+ Sbjct: 29 AIDTLSAYQSLRTATDRAYDRALLGSVRAIENGVTIERGQVQVNVPYVALSMFESTAQSN 88 Query: 88 IYYKVT---GLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAALLQPV 144 +YY+V ++GY DLP +P ++ RFY YH +PVRIAA+ +P+ Sbjct: 89 VYYRVAYEQAAGAAALTGYADLP-LPAGALDNDT----PRFYDTLYHGEPVRIAAVAKPL 143 Query: 145 YDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQL 204 Y + +IQV ET+E R + + + L R LV ++ L+W V LRPL +L Sbjct: 144 YQPGLPARIVIQVAETIETRRALQQAVWRGMLARDAALVAISVALLWLGVTLALRPLKRL 203 Query: 205 KGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPL 264 + +RA DL D V E+RPLVQA+N ++ R L +AQ +F+ADASHQLRTPL Sbjct: 204 ARGIAARASDDLRPLDATDVPAEVRPLVQAINHHIHRYAELAAAQSQFLADASHQLRTPL 263 Query: 265 TVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGAAEGGT 324 VL TQ+E LRE D +R+ + + + L ++LL LARA H + Sbjct: 264 AVLLTQAEYALRE-----TDPVRVREGLAAIIARLQSTNRLTSQLLALARARHAGQDAPP 318 Query: 325 MPLSLSDAARQVALELSQQAVSREIGLAFEEEG---DVSIEANALLLHELMVNLLDNAIR 381 L + AR V ++ A ++ L +++ G + + L E + NL+ NAIR Sbjct: 319 ETFDLGELARSVVVDALPLAREKQQDLGWDDSGLAAALPVSGYPAFLREALSNLVHNAIR 378 Query: 382 YTPAGGHVTLRVRAQSHPGQPTVALLEVEDSGPGI 416 YTP GG +T+R S AL+ V+D+GPG+ Sbjct: 379 YTPPGGRITVRAIKDSD-----AALVCVDDTGPGM 408