BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0121.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7953 [TK] COG0745 Response regulators consisting of a CheY-li... 252 5e-67 PA0756 [TK] COG0745 Response regulators consisting of a CheY-lik... 242 5e-64 RSc3392 [TK] COG0745 Response regulators consisting of a CheY-li... 233 3e-61 STM2785 [TK] COG0745 Response regulators consisting of a CheY-li... 219 5e-57 RSc2935 [TK] COG0745 Response regulators consisting of a CheY-li... 213 2e-55 >mll7953 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 223 Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 129/222 (58%), Positives = 160/222 (72%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LLVED+ EL+ WL K +R A+ V+ H+G D + L D+ALVILDL LPRM G+ Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL+ +RARGNR PV++LTA L RV GLN GADDYLAKPF++EELEAR++A LRR+ Sbjct: 61 EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 + A V+CG L FDT +R F+ GE LALTPREHAVLE L+V+ G TV K L ++ Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 E +A AIEIY+HR+RKKLE RV I TLRGLGYLL+ Sbjct: 181 FETDADPSAIEIYVHRVRKKLEG---SRVQIATLRGLGYLLR 219 >PA0756 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 223 Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 158/223 (70%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRILLVEDH +L+ + +A++ A TV+ +G AD L +++YAL ILD+ LPRMDG Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTVDLLQDGVAADLALASEEYALAILDVGLPRMDGF 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EVL R+R RG PVL+LTARG + DRV GLN+GADDYLAKPFEL ELEARVKALLRRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 CGAL +D +R F+ + L LT RE AVLEA+I R G + KE+L QVF Sbjct: 121 LGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L++ AS DAIEIY+HRLRKKLE G V I T RGLGYLL+A Sbjct: 181 LDEEASADAIEIYVHRLRKKLEG---GAVRIVTFRGLGYLLEA 220 >RSc3392 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 122/222 (54%), Positives = 156/222 (70%), Gaps = 3/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 M++LL+ED+ L++WL++A+R A TV+ A +G AD+LLLTQ Y +V+LDL LP + G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 VL+R+R R N PV+ILTA GG+ D+V+ L GADDYL KPFE+ EL AR++ L+RR+ Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 AV + CG LS+ T SRTF G L L REH VLE L+++ G TV K L VF Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 LED+AS +AIEIYIHRLRKKLEH I TLRGLGYLL+ Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSA---ATIVTLRGLGYLLR 219 >STM2785 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 224 Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 117/222 (52%), Positives = 152/222 (68%), Gaps = 4/222 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MR+LL ED+ EL+ WL KA+ V+C +G AD LL ++ YAL +LD+ +P MDG+ Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 EV++R+R RG PVL+LTAR +ADRV GLN+GADDYL KPFELEEL+AR++ALLRRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 G L F F G+ LALTPRE A+L L+ R V +++LF+QVF+ Sbjct: 121 GQVHEVQQLGELIFHDEG-YFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 L D S ++IE+YIHRLRKKL+ V ITTLRGLGY+L+ Sbjct: 180 LNDEVSPESIELYIHRLRKKLQGSD---VRITTLRGLGYVLE 218 >RSc2935 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 235 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 120/223 (53%), Positives = 153/223 (68%), Gaps = 3/223 (1%) Query: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 MRILLVED EL+ WLA+A+ + VE A +G A++ L + ++ V+LDL LPR DG Sbjct: 1 MRILLVEDEGELAAWLARALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGF 60 Query: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 VL MRAR +RTPVLILTA+G L +RV GLN GADD+L KPF L ELEAR+ AL+RRS+ Sbjct: 61 AVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRRSR 120 Query: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 + CG L FDT + F GE L+LTPREHA L AL+ + G + K LF +VF Sbjct: 121 GRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQA 223 L+ ++S DA+E+ +HRLRKKL G V I T+RGLGYLL+A Sbjct: 181 LDSDSSPDAVEVVVHRLRKKLAGSG---VQIVTVRGLGYLLEA 220