BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0109.p         (168 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2757 [S] COG4125 Predicted membrane protein Pae Pseudomonas ae...   159   2e-39
PA2880 [S] COG4125 Predicted membrane protein Pae Pseudomonas ae...   100   2e-21
RSp1513 [S] COG4125 Predicted membrane protein Rso Ralstonia sol...    95   7e-20
SMa1780 Non COG                                                        92   4e-19
AGc3030 [S] COG4125 Predicted membrane protein Atu Agrobacterium...    84   2e-16

>PA2757 [S] COG4125 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 147

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 19  MQGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 78
           MQG KRKLVY   +E + +  +T+GL++L G         AV  +T+A  WNFI+N LFE
Sbjct: 1   MQGIKRKLVYVTAYELIGMSISTLGLALLAGSTPTTTGPLAVVITTVAVTWNFIYNCLFE 60

Query: 79  RWEARQPRRGRNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFFMIY 138
            WE RQ  RGR+ ARR AHAIGF+  LV+ L+PL AWW+ ISL  AF LDL LIV    Y
Sbjct: 61  FWERRQAVRGRSIARRVAHAIGFQLTLVVYLIPLIAWWMGISLLEAFWLDLALIVLIPCY 120

Query: 139 TYLFNLLFDRVFGLPSSAMPAPSGQAAQV 167
           T+LFN  FDR+FGLP+SA+PA  G+AA V
Sbjct: 121 TFLFNWAFDRLFGLPTSALPA--GEAASV 147


>PA2880 [S] COG4125 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 171

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 9   PCAF---HRPEFIMQGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTI 65
           P AF   H    + +  K ++ +A  FE LA++ T   LS++      H  A  +  ST+
Sbjct: 11  PGAFAMTHTHTALDKTLKERIFHALAFEGLAVLLTAPVLSLVMNKPLAHMGALTLMFSTV 70

Query: 66  AFVWNFIFNGLFERWEARQPRRGRNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAF 125
           A +WN +FN LF+R + R   + R    R  HA+ FE GL+++LVPL AWWL I L  AF
Sbjct: 71  AMLWNMLFNSLFDRAQRRMGFQ-RTLQVRVLHAMLFELGLIVVLVPLAAWWLSIGLVEAF 129

Query: 126 VLDLGLIVFFMIYTYLFNLLFD 147
           +LD+GLI+FF+ YT  FN  +D
Sbjct: 130 LLDMGLILFFLPYTMAFNWSYD 151


>RSp1513 [S] COG4125 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 145

 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 1/124 (0%)

Query: 24  RKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFERWEAR 83
            ++++A  FE +A +      S L G       A  +  + +A  WN  FN +FER E R
Sbjct: 11  ERVLHALAFELIATLICAPLFSWLMGLPLAQMGALTILFALVAMAWNMAFNAVFERIERR 70

Query: 84  QPRRGRNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFFMIYTYLFN 143
              R R  A RAAHA+ FEGGLV++LVPL A WL +SL  A +LD+GL++FF+ YT+ FN
Sbjct: 71  CGWR-RTLAVRAAHAVAFEGGLVVLLVPLGAAWLGVSLLEALMLDIGLMLFFLPYTFCFN 129

Query: 144 LLFD 147
           L +D
Sbjct: 130 LAYD 133


>SMa1780 Non COG
          Length = 147

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 8/149 (5%)

Query: 19  MQGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 78
           M+ F  ++ +A LFEA+ ++  T   + L      H     + S+TIA +WNF+FN  F+
Sbjct: 3   MRTFPDRIRHALLFEAIGLMIITPVAAYLFNKPIMHMGVVGIGSATIATIWNFVFNLGFD 62

Query: 79  RWEARQ-PRRGRNFARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFFMI 137
               R      + F  R  H + FE GL+ +L+P  AW+L++ L+    LDL ++ F+++
Sbjct: 63  HGMRRMFGDTNKTFKMRLVHTVLFEIGLLAILLPPIAWYLNMGLFETLQLDLAIVAFYLV 122

Query: 138 YTYLFNLLFDRVFGLPSSAMPAPSGQAAQ 166
           Y ++FN+ +DRVF       P P+G+ A+
Sbjct: 123 YNFVFNVAYDRVF-------PVPAGRRAE 144


>AGc3030 [S] COG4125 Predicted membrane protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 145

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 19  MQGFKRKLVYACLFEALAIVFTTVGLSVLGGHDSGHATAAAVASSTIAFVWNFIFNGLFE 78
           M+  + ++ +A  FE + ++      ++L G          + S+T+A VWN+++N  F+
Sbjct: 1   MRSLQDRIRHALSFEIIGLMLVIPLGALLFGMPMEDIGIVGLVSATLATVWNYVYNLGFD 60

Query: 79  RWEARQPRRGRNF---ARRAAHAIGFEGGLVLMLVPLFAWWLDISLWNAFVLDLGLIVFF 135
              A Q  +G      A R AHA+ FE GL+++L+P  AW+L+ISL +A V+D+   +F+
Sbjct: 61  --HAMQRLKGTTLKTPAIRVAHAVLFELGLLIVLMPFIAWYLNISLVHALVMDISFALFY 118

Query: 136 MIYTYLFNLLFDRVFGLPS 154
           ++Y ++FN  +DR+F LP 
Sbjct: 119 VVYAFVFNWSYDRIFPLPE 137