BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0106.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4182 [K] COG2808 Transcriptional regulator Pae Pseudomonas aer...   186   1e-47
RSp0689 [K] COG2808 Transcriptional regulator Rso Ralstonia sola...   171   3e-43
mlr6176 [K] COG2808 Transcriptional regulator Mlo Mesorhizobium ...   108   3e-24
mll0013 [K] COG2808 Transcriptional regulator Mlo Mesorhizobium ...   100   6e-22
XF2038 [K] COG2808 Transcriptional regulator Xfa Xylella fastidi...    91   8e-19

>PA4182 [K] COG2808 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 212

 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 101/126 (80%)

Query: 1   VSPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDERYLRGVVARLTRTHEAGEQKPWKM 60
           +SP WYPSK E HRQVPTWNY V HAHGRV IRDDERY+RG+VARLTRTHEA ++ PWKM
Sbjct: 85  ISPQWYPSKQEHHRQVPTWNYRVVHAHGRVRIRDDERYVRGLVARLTRTHEATQETPWKM 144

Query: 61  SDAPADFTDTLLKAIVGIEIEITRLEGKRKLSQNKEVRDIEGAGHTLVARGHEALGQAML 120
           +D PAD+ D +L+ IVGIEIEITRL GK KLSQNKE RDI GA   L+ARG +A+G AM 
Sbjct: 145 TDGPADYIDEMLRLIVGIEIEITRLVGKFKLSQNKEARDIRGASAALLARGEQAIGAAMD 204

Query: 121 AEAQRK 126
             A R+
Sbjct: 205 DCAARR 210


>RSp0689 [K] COG2808 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 212

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 94/127 (74%)

Query: 1   VSPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDERYLRGVVARLTRTHEAGEQKPWKM 60
           +SP+WYPSK E HR VPTWNY V HAHGR+ IRDDER++RGV+ RLTR HEA +  PWKM
Sbjct: 85  ISPNWYPSKPEHHRHVPTWNYRVVHAHGRIAIRDDERFVRGVLGRLTRAHEASQPVPWKM 144

Query: 61  SDAPADFTDTLLKAIVGIEIEITRLEGKRKLSQNKEVRDIEGAGHTLVARGHEALGQAML 120
           +DAPAD+   LLK IVGIEIEITRL GK KL QN+E RD  GA   L A G + +G AML
Sbjct: 145 ADAPADYVSALLKEIVGIEIEITRLVGKAKLGQNREARDARGAATALKASGKDIIGDAML 204

Query: 121 AEAQRKQ 127
           A    K+
Sbjct: 205 ACLAEKR 211


>mlr6176 [K] COG2808 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 207

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 65/109 (59%)

Query: 1   VSPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDERYLRGVVARLTRTHEAGEQKPWKM 60
           V+P+WY +K E  + VPTWNY   HA+G V   +D   L  VV RLT  HE     PW +
Sbjct: 84  VTPAWYATKRETGKVVPTWNYVAVHAYGPVEFFEDAGRLLDVVNRLTDHHEGERASPWAV 143

Query: 61  SDAPADFTDTLLKAIVGIEIEITRLEGKRKLSQNKEVRDIEGAGHTLVA 109
           SDAP DF    L+ IVG+ + ITRLEGKRK+SQN+   D  G    L A
Sbjct: 144 SDAPPDFIQAQLRGIVGLRMPITRLEGKRKMSQNRNAADRAGVAAGLAA 192


>mll0013 [K] COG2808 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 216

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 65/107 (60%)

Query: 1   VSPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDERYLRGVVARLTRTHEAGEQKPWKM 60
           V+PSWY +K E  + VPTWNY++    G   + DD+ +L   +A LT + E   Q PW +
Sbjct: 87  VTPSWYETKRETGKVVPTWNYAIVQVRGTAKVIDDQEWLAQQIADLTGSQEGARQAPWAV 146

Query: 61  SDAPADFTDTLLKAIVGIEIEITRLEGKRKLSQNKEVRDIEGAGHTL 107
           +DAP  F  + +K I+G+EIEI+ + GK K+SQN+ V D  G    L
Sbjct: 147 TDAPPPFIQSQIKGIIGLEIEISEIHGKWKVSQNRPVADRAGVAQGL 193


>XF2038 [K] COG2808 Transcriptional regulator Xfa Xylella fastidiosa 9a5c
          Length = 216

 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 60/107 (56%)

Query: 1   VSPSWYPSKHEAHRQVPTWNYSVAHAHGRVTIRDDERYLRGVVARLTRTHEAGEQKPWKM 60
           +SPSWYPSK      VPTWNY   HAHG +    D  +LR  +A L+   E   Q+PW++
Sbjct: 86  ISPSWYPSKATHPAVVPTWNYVAVHAHGELMRTRDPHWLRTHLAALSDIMERDRQEPWRL 145

Query: 61  SDAPADFTDTLLKAIVGIEIEITRLEGKRKLSQNKEVRDIEGAGHTL 107
            D P D     + A+VG+ + IT+L G  KLSQNK   D  G  H L
Sbjct: 146 DDLPTDALRQAVDALVGLRLRITQLYGIHKLSQNKPPTDRLGVRHGL 192