BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0104.p         (524 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0052 [T] COG0642 Signal transduction histidine kinase Bme B...   179   1e-44
AGl216 [T] COG0642 Signal transduction histidine kinase Atu Agro...   168   3e-41
mll0989_2 [T] COG0642 Signal transduction histidine kinase Mlo M...   156   1e-37
SMb20868_3 [T] COG0642 Signal transduction histidine kinase Sme ...   155   3e-37
CC0759_2 [T] COG0642 Signal transduction histidine kinase Ccr Ca...   150   5e-36

>BMEII0052 [T] COG0642 Signal transduction histidine kinase Bme Brucella
           melitensis
          Length = 355

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 148/239 (61%)

Query: 283 EYAIRAAQIDMERVSRANTVGQLTASIAHEINQPLMSIVANAGASLRWLDRAVPDLEHAR 342
           E  +R ++  + R++R  T+GQLT+SIAHE++QPL++I  +A A  RWL ++ P+ E A 
Sbjct: 110 EIDVRESRERLLRLARMTTLGQLTSSIAHEVSQPLVAIEISASAGRRWLAQSPPNNERAA 169

Query: 343 TGLRDIIAEGQRAGGIISGLRDLTRNAAPVCERVNLHAVIRHILTLSRSELERREVSLLL 402
             +  I  +  RA  I+  +R L+R   P     +++ V+R I+ L+ +E+ R +++L L
Sbjct: 170 AAIERISVDSHRAIEILDRVRRLSRGEKPHVAPFDINEVVRDIVELAHNEITRHDIALDL 229

Query: 403 SLTPADAFVLGDQVQLQQVMLNLVVNAIEAMSGMPEHARVLSITASSCDEQRIEVRVQDS 462
            LTP     L D+VQ+QQV+ NLV+NAIEA+       R L I  +  +  R++V V+DS
Sbjct: 230 DLTPGLPMALADRVQIQQVIGNLVLNAIEAIQEKDPPVRSLKINTALTEGARLQVAVRDS 289

Query: 463 GEGIAPEAMRRVFDAFYTTKDSGMGMGLAICRSIIENHRGRLRVAAAQPHGALFSFDLP 521
           G GIAP    R+FDAF+TTK  G G+GL I R+I+E+  G + + +  PHG    F++P
Sbjct: 290 GGGIAPADQERLFDAFWTTKKGGFGLGLTISRTIVESSGGTIALGSTTPHGTTILFEVP 348


>AGl216 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 526

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 154/281 (54%), Gaps = 3/281 (1%)

Query: 242 ICRQDTGEVR-YLSGIGKPIWRDGTFTEYVGTATDITVRRQNEYAIRAAQIDMERVSRAN 300
           + R D+GE +  L  I  P     +F   V +  D+T R     A+  AQ ++ + S+A 
Sbjct: 240 VVRTDSGEDKLVLLSISFPA-EAASFNRVVVSMVDVTQREMELKALAEAQAELTKASKAA 298

Query: 301 TVGQLTASIAHEINQPLMSIVANAGASLRWLDRAVPDLEHARTGLRDIIAEGQRAGGIIS 360
            VG ++AS++HE+NQPL +I+ NA   LRWLDR  PDL  AR     +I +G+RA  II 
Sbjct: 299 AVGAMSASLSHELNQPLGAIIVNAQTLLRWLDRDPPDLAAARRSAERMIRDGERASDIIQ 358

Query: 361 GLRDLTRNAAPVCERVNLHAVIRHILTLSRSELERREVSLLLSLTPADAFVLGDQVQLQQ 420
             R L  + +   E  +L   I   L+L   ELER   ++ +    A   +   +++LQQ
Sbjct: 359 NTRSLLAHTSGKVETFDLDEFIDETLSLLEHELERSGTTVHVE-NEATPPITAVRIELQQ 417

Query: 421 VMLNLVVNAIEAMSGMPEHARVLSITASSCDEQRIEVRVQDSGEGIAPEAMRRVFDAFYT 480
           V++NL+ NAI+AM       R +++     D   I++ V+DSG G   +   ++F  F+T
Sbjct: 418 VLINLLTNAIQAMDEAGISNRTITVRKEREDGDNIQIAVEDSGPGFPAQMKDKLFSPFFT 477

Query: 481 TKDSGMGMGLAICRSIIENHRGRLRVAAAQPHGALFSFDLP 521
           TK++GMGMGL+ICR+ +E   GRL        GA+F+  +P
Sbjct: 478 TKETGMGMGLSICRTTLEARGGRLTGDNHPLGGAVFTISMP 518


>mll0989_2 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium
           loti
          Length = 228

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 121/214 (56%), Gaps = 4/214 (1%)

Query: 309 IAHEINQPLMSIVANAGASLRWLDRAVPDLEHARTGLRDIIAEGQRAGGIISGLRDLTRN 368
           IAHE+NQPL ++VANAGA  RWL    P+ +HA    + II     A  +I  +R L   
Sbjct: 1   IAHELNQPLQAVVANAGAFQRWLTADPPNFDHAGRVAQKIIRNADAAAQVIGRIRSLFSK 60

Query: 369 AAPVCERVNLHAVIRHILTLSRSELERREVSLLLSLTPADAFVLGDQVQLQQVMLNLVVN 428
                + ++L+A+IR +  L    L    V L L L P       D VQ++QV+LNLV N
Sbjct: 61  TEGEPQPLDLNALIREVCELMGDRLASSRVMLELDLDPELPATAADHVQMEQVVLNLVRN 120

Query: 429 AIEAMSGMPEHARVLSITASSCDEQRIEVRVQDSGEGIA-PEAMRRVFDAFYTTKDSGMG 487
            IEAM  +   AR L I +   D+  +EV V+D G G++ PE   R+F+AFYTTK  GMG
Sbjct: 121 GIEAMQDVSTTARSLRIVSRGQDDGTVEVEVRDRGRGLSDPE---RIFEAFYTTKPDGMG 177

Query: 488 MGLAICRSIIENHRGRLRVAAAQPHGALFSFDLP 521
           MGL ICRSI+E H GR+     +  GA   F LP
Sbjct: 178 MGLPICRSIVEAHYGRVWAKNVEGGGASIIFSLP 211


>SMb20868_3 [T] COG0642 Signal transduction histidine kinase Sme Sinorhizobium
           meliloti
          Length = 246

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 145/247 (58%), Gaps = 8/247 (3%)

Query: 278 VRRQNEYAIRAAQIDMERVSRANTVGQLTASIAHEINQPLMSIVANAGASLRWLDRAVPD 337
           VR Q E  +R AQ  + R  +A ++ +L+ASIAHE+NQPL +IVAN+ A  RWL     +
Sbjct: 2   VRMQEE--LRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANSHACYRWLSADPVN 59

Query: 338 LEHARTGLRDIIAEGQRAGGIISGLRDLTRNAAPVCERVNLHAVIRHILTLSRSELERRE 397
           +E A+     +I + + A  ++S +R L + +      + L  VI    +L  +E  RR 
Sbjct: 60  IERAKITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRR 119

Query: 398 VSLLLSLTPADAFVLGDQVQLQQVMLNLVVNAIEAMSGMPEHARVLSITASSCDEQRIEV 457
           + L + +    A V  D++Q+QQV++NL+ N +EAM  + ++  V        DE RIE 
Sbjct: 120 IRLNIDVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDVRMHQVDDEVRIE- 178

Query: 458 RVQDSGEGIA-PEAMRRVFDAFYTTKDSGMGMGLAICRSIIENHRGRLRVAAAQPHGALF 516
            + D+G G+A PE   R+F+ F+TTK++GMGMGLAI RSI+E H GRL     +P GA F
Sbjct: 179 -IGDNGNGVAFPE---RIFEPFFTTKENGMGMGLAISRSIVEAHGGRLWAEKNEPRGARF 234

Query: 517 SFDLPRV 523
            F LP V
Sbjct: 235 VFTLPNV 241


>CC0759_2 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter
           vibrioides
          Length = 244

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 123/227 (54%), Gaps = 1/227 (0%)

Query: 296 VSRANTVGQLTASIAHEINQPLMSIVANAGASLRWLDRA-VPDLEHARTGLRDIIAEGQR 354
           VSR   +G++ +++AHE+NQPL +I      S R +DR    D    R  +    A+  R
Sbjct: 4   VSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMDRGREADQAKVRDAIDRAAAQALR 63

Query: 355 AGGIISGLRDLTRNAAPVCERVNLHAVIRHILTLSRSELERREVSLLLSLTPADAFVLGD 414
           AG +I  +RD  R  A   E  +L  +I     L+    + R+V + L L P    V  D
Sbjct: 64  AGEVIHRMRDFARRGASEREVESLSKLIEEASALALIGEKERQVDVRLKLDPKADDVFAD 123

Query: 415 QVQLQQVMLNLVVNAIEAMSGMPEHARVLSITASSCDEQRIEVRVQDSGEGIAPEAMRRV 474
           +VQ+QQV+LNL+ N I+AM       R L I     +E   EV V D+G GIAPE + R+
Sbjct: 124 RVQIQQVLLNLIRNGIDAMQAQEPRKRALLIRTGLTEEGWSEVSVADTGPGIAPEVLERL 183

Query: 475 FDAFYTTKDSGMGMGLAICRSIIENHRGRLRVAAAQPHGALFSFDLP 521
           F  F TTK  GMG+GL+I RSIIE H GR+   A    GALF F LP
Sbjct: 184 FQPFMTTKPQGMGVGLSISRSIIEAHGGRIWAEANPGGGALFRFTLP 230