BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0101.p         (54 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0241 [S] COG4317 Uncharacterized protein conserved in bacteri...    66   2e-11
AGl1747 [S] COG4317 Uncharacterized protein conserved in bacteri...    60   1e-09
SMa1820 Non COG                                                        59   2e-09

>RSc0241 [S] COG4317 Uncharacterized protein conserved in bacteria Rso
          Ralstonia solanacearum
          Length = 96

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 41/52 (78%)

Query: 1  MSAYLISLCAGILIGVVYALFRVRSPAPPGIALVGLLGMVLGERLAASLHLL 52
          M  YLISL AGIL+G++YAL  VRSPAPP IALVGLLGM++GE++  +   L
Sbjct: 1  MKPYLISLGAGILVGIIYALLHVRSPAPPTIALVGLLGMLIGEQIVPAAQRL 52


>AGl1747 [S] COG4317 Uncharacterized protein conserved in bacteria Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 117

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 39/45 (86%)

Query: 1  MSAYLISLCAGILIGVVYALFRVRSPAPPGIALVGLLGMVLGERL 45
          M  YL+SL AG+L+G+VY+L  VRSPAPP IALVGLLG+++GE++
Sbjct: 22 MKVYLLSLGAGLLVGIVYSLLNVRSPAPPVIALVGLLGILVGEQI 66


>SMa1820 Non COG
          Length = 102

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 38/44 (86%)

Query: 1  MSAYLISLCAGILIGVVYALFRVRSPAPPGIALVGLLGMVLGER 44
          M  YL+SL AG+L+GV+Y+L  VRSPAPP IALVGLLG+++GE+
Sbjct: 7  MKMYLLSLGAGLLVGVIYSLLNVRSPAPPVIALVGLLGILVGEQ 50