BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0093.p (202 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 112 6e-25 PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 97 3e-20 PA4895 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 82 5e-16 AGl2289 [PT] COG3712 Fe2+-dicitrate sensor, membrane component A... 80 4e-15 PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pa... 79 1e-14 >PA0471 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 323 Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 112/212 (52%), Gaps = 32/212 (15%) Query: 5 WIVRLSAGDAAQQQETAAAFARWQ--------------GQSRQHAQAAPRPGRG------ 44 W + L +G+A + AF RW G R A+AA P R Sbjct: 21 WQLLLDSGEA--HPDDHRAFHRWYAAHPEHERAWEQLGGLDRHLARAANGPARNALLSGN 78 Query: 45 --------RRAVAALALACCIGLPLWLAWQAYPARYLLADMRTATGHWDARTLADGSRLL 96 R +AL L +G+ L +A + P RYLLAD +ATG TL D + + Sbjct: 79 ARFKRRLRRLGGSALGLVLALGVGLGVANRYVPVRYLLADAYSATGEQRELTLPDATHVR 138 Query: 97 LSGSSAANFHFDAQRRTVELVQGELLVEVARDPARPFVIQTADGSIRALGTRFLVRRDQA 156 L+ SA + FD +RR V L+ GE+LVE A RPFV+ +ADG +RALGTRFLVRR++ Sbjct: 139 LNSRSAIDVRFDGERRQVVLLAGEILVETAHGDPRPFVVSSADGDMRALGTRFLVRREEP 198 Query: 157 GTLVSMLESKVSIQPGADTTQVPLVLEAGQRV 188 GT +++L+S V+ + A+T V++ GQ+V Sbjct: 199 GTRLTVLQSAVAAR--AETLSEERVIKEGQQV 228 >PA1911 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 316 Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 112/222 (50%), Gaps = 34/222 (15%) Query: 2 AADWIVRLSAGDAAQQQETAAAFARWQGQSRQHAQAAPRPGR------------------ 43 AA+W+VRL D+ +T A A+W+ +S QHA A R R Sbjct: 17 AAEWLVRLQ--DSGCTDDTRQACAQWRQRSPQHAHAWERAERLLQCLGRLPPALALPTLG 74 Query: 44 ------GRRAVAALALACCIGLPLWLA-WQAYPARYLLADMRTATGHWDARTLADGSRLL 96 RRA+ LAL G L LA WQA P R LAD RT G TL DGS L Sbjct: 75 RERGLDRRRAIKHLALVLG-GASLGLATWQAEPLRDWLADQRTGVGEQRRLTLPDGSLLT 133 Query: 97 LSGSSAANFHFDAQRRTVELVQGELLVEVARDPARPFVIQTADGSIRALGTRFLVRRDQA 156 L+ SA + FDA +R V L++GE+ V+ DP RPF + TA+ + A RF VR++ A Sbjct: 134 LNTDSAVDLAFDASQRLVRLLRGEIFVDSRADP-RPFRVATAEARLHAGAARFNVRQEMA 192 Query: 157 GTLVSMLESKVSIQPGADTTQVPLVLEAGQRVRLHGGAAGXA 198 T V++L +V + P + LE+G+ VRL GA G A Sbjct: 193 ATRVAVLAGRVELSPLHGRGR---WLESGESVRL--GADGEA 229 >PA4895 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 340 Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 5/135 (3%) Query: 61 LWLAWQAYPARYLL-ADMRTATGHWDARTLADGSRLLLSGSSAANFHFDAQRRTVELVQG 119 +W W+A R AD TA G L DGS++ ++ SA + +DA +R + L +G Sbjct: 115 VWWGWRAQVWRDGFGADYLTAVGERRDLVLEDGSQVEMNTDSALDVRYDAGQRLLRLYRG 174 Query: 120 ELLVEVA---RDPARPFVIQTADGSIRALGTRFLVRRDQAGTLVSMLESKVSIQP-GADT 175 E+ + A R+P RPF+++T G +RALGT F VRR+ A T++++ E V ++P GA + Sbjct: 175 EIYLRTAADRREPPRPFLVRTEQGLMRALGTAFSVRREGAETVLAVYEGAVQVRPEGAAS 234 Query: 176 TQVPLVLEAGQRVRL 190 V+EAGQRVR Sbjct: 235 AADGRVIEAGQRVRF 249 >AGl2289 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 323 Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 37/228 (16%) Query: 2 AADWIVRLSAGDAAQQQETAAAFARWQGQSRQHAQA-----------------------A 38 AADW+ R D Q + A F RW ++ +A A Sbjct: 21 AADWVFR--NRDPDQPETELAEFRRWMELDPENCRAYTAAKRILGEARTAIRSDAGLREA 78 Query: 39 P--RPGRGRRAVAALALACCIGLPLWLAWQAYPARYLLADMRTATGHWDARTLADGSRLL 96 P RGR A+ + +A L++A P R + AD+ + T TL DGSR+ Sbjct: 79 PVSSSSRGRNAIISSVVAIAAAGTLFIALDG-PMR-MSADIMSDTDEMPEVTLEDGSRVQ 136 Query: 97 LSGSSAANFHFDAQRRTVELVQGELLVEVARDPARPFVIQTADGSIRALGTRFLVRRDQA 156 L+ SSA F ++RRTV L++G+ +V+ D RPF + D + ALGT F VR+ Sbjct: 137 LNASSAIALDFTSERRTVRLLRGQAFFQVSPDAKRPFSVSADDTLVTALGTAFDVRQSAT 196 Query: 157 GTLVSMLESKVSI---QPGADTTQVPLVLEAGQRVRLHGGAAGXAGQR 201 T +++ E V + +PGA +P+ + G+ V LH G + R Sbjct: 197 DTRIAVTEHSVRVDFKEPGA----LPVKVGEGEEV-LHLNETGKSTIR 239 >PA2467 [PT] COG3712 Fe2+-dicitrate sensor, membrane component Pae Pseudomonas aeruginosa Length = 328 Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 45 RRAVAALALACCIGLPLWLAWQAYPARYLLADMRTATGHWDARTLADGSRLLLSGSSAAN 104 R+A+ L+L G W+ + P + L AD TATG + L DG+RL L+ SA + Sbjct: 86 RQALKLLSLLVAGGAVAWVGRDSLPWQRLSADYSTATGERRSIELVDGTRLQLNTDSAVD 145 Query: 105 FHFDAQRRTVELVQGELLVEVARDPA----RPFVIQTADGSIRALGTRFLVRRDQAGTLV 160 +DA +R + L +GE+ + D RP ++TA G ALGTRF VR A T + Sbjct: 146 VRYDAGQRLILLARGEIFLASGADTQSPTHRPLRVRTAQGLFEALGTRFNVRLQDAATCL 205 Query: 161 SMLESKVSIQP-GADTTQVPLVLEAGQRVRL 190 S+ E V I GA Q P V EAGQ R+ Sbjct: 206 SVSEGSVRIDAFGARPLQAP-VAEAGQSYRI 235