BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0042.0052.p         (254 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P...   190   3e-48
PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae...   160   3e-39
RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso ...   158   1e-38
PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P...   128   1e-29
PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P...   127   2e-29

>PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas
           aeruginosa
          Length = 439

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 106/127 (83%)

Query: 83  ILRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKQHGIGDWSYEDFA 142
           + +G YLARAGDCVACHT++ G PFAGGL + +PIGA+YSTNITPD++ GIGD+S+EDF 
Sbjct: 28  VRQGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITPDRKTGIGDYSFEDFD 87

Query: 143 RLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPLSM 202
           R +R GV ++G T+YPAMPYPSY+R+++ DM+ALYAYF   V P  Q N+A+DIPWPLSM
Sbjct: 88  RAVRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWPLSM 147

Query: 203 RWPLALY 209
           RWPLA +
Sbjct: 148 RWPLAFW 154


>PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas
           aeruginosa
          Length = 441

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 93/127 (73%)

Query: 83  ILRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKQHGIGDWSYEDFA 142
           I +G Y+A+ GDC+ACHT   GAP AGGL L +P+G IYSTNITPD++ GIG +S+E+F 
Sbjct: 33  IEKGRYVAQLGDCIACHTGPQGAPMAGGLELKTPMGTIYSTNITPDRETGIGRYSFEEFD 92

Query: 143 RLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPLSM 202
           R MR GVT  G  +YPAMPYPSY+++++EDM+ALYAY    V P  Q N  + + WP + 
Sbjct: 93  RAMRKGVTAEGVNLYPAMPYPSYAKISEEDMRALYAYLMHGVQPVTQANTPSAMSWPFNQ 152

Query: 203 RWPLALY 209
           RW L+L+
Sbjct: 153 RWGLSLW 159


>RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia
           solanacearum
          Length = 429

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 92/136 (67%), Gaps = 1/136 (0%)

Query: 82  QILRGAYLARAGDCVACHTSKGGAPFAGGLALASP-IGAIYSTNITPDKQHGIGDWSYED 140
           QI RG YLA AGDCVACHT+ GG PFAGGL L  P +G IYS+NITPD + GIG W YED
Sbjct: 32  QIKRGEYLAIAGDCVACHTAPGGKPFAGGLPLQIPMLGTIYSSNITPDPKTGIGKWRYED 91

Query: 141 FARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPL 200
           F R +R GV+  G  +YPAMPYPSY+++ D DM+ LYAYF   V           I WPL
Sbjct: 92  FERAVRQGVSDDGENLYPAMPYPSYAKINDADMRDLYAYFRYGVAAVQYAPPPGTIRWPL 151

Query: 201 SMRWPLALYVLFPLKE 216
           +MRWPL L+ L  LK 
Sbjct: 152 NMRWPLKLWNLAFLKR 167


>PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas
           aeruginosa
          Length = 415

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/130 (50%), Positives = 84/130 (64%), Gaps = 1/130 (0%)

Query: 83  ILRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKQHGIGDWSYEDFA 142
           + RG YLARA DC+ACHT++GGAPFAGGL + SP G IY TNITPDK+HGIG +S ++F 
Sbjct: 30  VKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNITPDKEHGIGAYSADEFF 89

Query: 143 RLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPLSM 202
             +  G  K G  +YPAMPY SY  +  ED  A+YAY   A  P A+      + +P ++
Sbjct: 90  AALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYL-MAQEPIARPAPQTSLSFPFNV 148

Query: 203 RWPLALYVLF 212
           R  LA + L 
Sbjct: 149 RMGLAGWNLL 158


>PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas
           aeruginosa
          Length = 433

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 81  QQILRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKQHGIGDWSYED 140
           +QI RG  LA  GDC  CHT +GG   AGG AL +P G IYS+N+TPD+  GIG WSY  
Sbjct: 44  EQIARGERLAALGDCAVCHTREGGPRNAGGRALPTPFGTIYSSNLTPDRASGIGGWSYPA 103

Query: 141 FARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPL 200
           F R MR GV + G  +YPA PY +++R  DED++ALYAY   + P    E  AN +P+P 
Sbjct: 104 FERAMRHGVARDGSYLYPAFPYTAFTRTRDEDLKALYAYL-MSQPAVHSETPANQLPFPF 162

Query: 201 SMRWPLALYVLFPLK 215
             R  +A + L  L 
Sbjct: 163 DQRQLMAGWNLLFLD 177