BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0018.p (267 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5707 Non COG 262 6e-70 SMc02323 [KG] COG1349 Transcriptional regulators of sugar metabo... 260 2e-69 AGl2687 [KG] COG1349 Transcriptional regulators of sugar metabol... 240 2e-63 VCA0247 [KG] COG1349 Transcriptional regulators of sugar metabol... 142 5e-34 mll3600 Non COG 134 1e-31 >mll5707 Non COG Length = 267 Score = 262 bits (669), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 129/254 (50%), Positives = 177/254 (69%), Gaps = 1/254 (0%) Query: 1 MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60 M R + +LS + E +TV++ L +S AT+RRDIA L + L R RGGAE ++ Sbjct: 1 MHEKERHRIILSAVQEKPVVTVQEMVDLTESSEATIRRDIAALHVQKRLRRVRGGAEAIS 60 Query: 61 QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120 + L+G F + +QKRAIAR A E+C +GE IIINGGTTTF M +L +R Sbjct: 61 PPQ-FIGLAGRPFSVNETINASQKRAIAREAVELCGDGEPIIINGGTTTFQMVHFLTGRR 119 Query: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180 + I TNSF +AE LL S+N +++ GG IYREQN+ILSPF+ND+T++ YA +MFMG G+ Sbjct: 120 MPIFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFDNDVTRNFYARRMFMGAQGL 179 Query: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240 LGLME DPLLIQAE++L+ QA++LVVL DSSKF +++ LILCGL+R+ ++TD GI D Sbjct: 180 GPLGLMEGDPLLIQAEQKLIDQADELVVLVDSSKFRKRSSLILCGLSRIATVITDDGIED 239 Query: 241 AAAQMMEQAGVKVV 254 A+M+E AGV ++ Sbjct: 240 REAKMLETAGVTLI 253 >SMc02323 [KG] COG1349 Transcriptional regulators of sugar metabolism Sme Sinorhizobium meliloti Length = 270 Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 1/257 (0%) Query: 1 MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60 M R + +LS + E TV + L +S AT+RRDIA L + L R RGGAE + Sbjct: 1 MHEKERHRIILSAVQEKPVATVPELVDLTGSSEATIRRDIAALHVQKRLRRVRGGAEAIN 60 Query: 61 QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120 + L+G F+ + +K+AIAR A +C +GE IIINGGTTTF M +LA +R Sbjct: 61 PPQFV-GLAGRPFRVNEGLHAREKQAIAREAVALCQDGEPIIINGGTTTFQMVHFLANRR 119 Query: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180 +++ TNSF +AE LL S+N +++ GG IYREQN+ILSPFEND+T++ YA +MFMG G+ Sbjct: 120 MQVFTNSFPIAEHLLKHSKNTVMLSGGTIYREQNIILSPFENDVTRNFYARRMFMGAQGL 179 Query: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240 LGLMEADPLLIQAE++L+ QA+ LVVL DSSKF R++ LILCGL R+ ++TD+GI D Sbjct: 180 GPLGLMEADPLLIQAEQKLIDQADDLVVLVDSSKFHRRSSLILCGLKRIATVITDSGIED 239 Query: 241 AAAQMMEQAGVKVVTVA 257 A M+E AGV ++ A Sbjct: 240 RHASMLENAGVSLIVAA 256 >AGl2687 [KG] COG1349 Transcriptional regulators of sugar metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 276 Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/254 (47%), Positives = 176/254 (69%), Gaps = 1/254 (0%) Query: 1 MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA 60 M R + +LS E +TV+ L +AS AT+RRDIA L + L R RGGAE + Sbjct: 1 MHERERHRIILSATQEKAVVTVQDIAELTDASEATIRRDIASLHVQGKLRRVRGGAEAVH 60 Query: 61 QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR 120 + L+ F+ S + +KRAIAR A ++C++G+ II+NGGTTTF M Y+A +R Sbjct: 61 PPQLG-NLAARPFRVSESVNIDKKRAIARKAVDLCNDGDAIILNGGTTTFQMVHYMAARR 119 Query: 121 LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV 180 L+++TNSF +AE L+ S+ + VPGG IYR+Q++ILSPFEND ++ YA ++F+G GV Sbjct: 120 LQVMTNSFAIAEHLVKHSKCNVNVPGGAIYRDQSLILSPFENDAIRNFYARRIFLGAQGV 179 Query: 181 SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240 LG+ME+D L+IQ+E++L+ QAE+L+V+ DSSKF +++ LILC L V ++TD GISD Sbjct: 180 GALGIMESDALVIQSEQKLMRQAEELIVMVDSSKFRKRSSLILCPLENVTTIITDDGISD 239 Query: 241 AAAQMMEQAGVKVV 254 AA+M+E AGV+++ Sbjct: 240 EAARMVENAGVELL 253 >VCA0247 [KG] COG1349 Transcriptional regulators of sugar metabolism Vch Vibrio cholerae Length = 251 Score = 142 bits (359), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 79/251 (31%), Positives = 138/251 (54%), Gaps = 5/251 (1%) Query: 6 RRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLAQKRSA 65 R +LSLL E+ A+ V N S AT RRDIA L E L + R GAER+ ++ Sbjct: 6 RHNGILSLLEENQAINVSHIIERFNVSPATARRDIAKLDELGKLRKVRNGAERIENQKRK 65 Query: 66 FALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKRLKILT 125 ++ + +K IA AAE+C G++++IN G+T FL+ + L + ++I+T Sbjct: 66 WS----PLNINSTEHYEEKSLIALKAAELCQPGDSVVINCGSTAFLLGQQLCGENVQIVT 121 Query: 126 NSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGVSMLGL 185 N F +A L+ + +I+ GGQ R Q++ L+P + + + + MF G++ GL Sbjct: 122 NYFPLASYLINEDHDDVIIIGGQYNRAQSIFLNPAPDSLG-GYAGNWMFTSGKGLTEAGL 180 Query: 186 MEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISDAAAQM 245 + D L AE+++L Q ++LVV+ DSSK ++ G++ C ++++ ++T + + Sbjct: 181 YKTDMLTAVAEQQMLEQIDKLVVVVDSSKVGQRTGMLFCSTSKIDIVITGKNANAEVVKA 240 Query: 246 MEQAGVKVVTV 256 +E G +V+ V Sbjct: 241 IEAQGTQVILV 251 >mll3600 Non COG Length = 267 Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 13/256 (5%) Query: 3 NHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLAQK 62 + R+++++ LL + +V + L SAATVRRDI + E + GG L Sbjct: 10 DSGRQRQIVELLRDRPFASVRELQERLGVSAATVRRDIDRIDEAGEARKVYGGISALDGA 69 Query: 63 RSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKRLK 122 A + + KR IA AA M +G+ +I++GG+T F + LA++ ++ Sbjct: 70 SHAGVAYARPYDENRDLAVEAKRQIAAIAATMVRDGDAVIVHGGSTCFHLGVKLAERNIR 129 Query: 123 ILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILS-----PFENDITQHHYASKMFMGI 177 + TNS +A L + V GG+++RE +I S PF YASK F+G Sbjct: 130 LYTNSMPLAAYLSDHGYCSLTVAGGELHREPGIIHSLTQATPF--------YASKFFLGA 181 Query: 178 YGVSMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTG 237 G++ G++E+ PLL+++ L A+Q+VVLADS K S A + L+R+ L+TD G Sbjct: 182 QGLNQEGVLESHPLLVRSIVDLSLCADQIVVLADSRKLSIHARNVALPLSRIGTLITDDG 241 Query: 238 ISDAAAQMMEQAGVKV 253 +SDA A+M+E AGV V Sbjct: 242 LSDADARMLEDAGVMV 257