BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0212.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1114 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum             148   3e-36
XF2601 [C] COG1146 Ferredoxin Xfa Xylella fastidiosa 9a5c             121   3e-28
PA3621 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa              111   4e-25
RSp0807 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum             104   5e-23
PA2715 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa               91   9e-19

>RSc1114 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum
          Length = 108

 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 81/86 (94%), Gaps = 1/86 (1%)

Query: 1   VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRS-WPS 59
           VDCFREGPNFL IDPDECIDCAVCVAECPVNAIYAEEDVPADQQ++IA+NAEL+++ WPS
Sbjct: 23  VDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINAELAQAGWPS 82

Query: 60  ITKTKAPLPEAEEWKDKTDKLQYLQR 85
           ITKTK+PLP+AEEWKD  DK QYL+R
Sbjct: 83  ITKTKSPLPDAEEWKDVKDKEQYLER 108


>XF2601 [C] COG1146 Ferredoxin Xfa Xylella fastidiosa 9a5c
          Length = 107

 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 66/85 (77%)

Query: 1   VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60
           VDCF EGPNFL IDPDECIDC +C  ECP NAIY EEDVP +Q+Q IALNAEL+++WP +
Sbjct: 23  VDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEEDVPTEQKQCIALNAELAKAWPVV 82

Query: 61  TKTKAPLPEAEEWKDKTDKLQYLQR 85
           T  + P+P+A EW  K DKL  LQR
Sbjct: 83  TVRREPMPDAAEWDGKPDKLALLQR 107


>PA3621 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa
          Length = 107

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 65/85 (76%)

Query: 1   VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRSWPSI 60
           VDCF EGPNFL I PDECIDCA+C  ECP  AI++E++VP + Q++I LN+EL+  WP+I
Sbjct: 23  VDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPENMQEFIELNSELAEVWPNI 82

Query: 61  TKTKAPLPEAEEWKDKTDKLQYLQR 85
           T+ K  LP+AEEW     KLQ+L+R
Sbjct: 83  TEKKDALPDAEEWDGVAGKLQHLER 107


>RSp0807 [C] COG1146 Ferredoxin Rso Ralstonia solanacearum
          Length = 112

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 5/85 (5%)

Query: 1   VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSRS--WP 58
           +DCF  GPNFL IDPD CIDC++C  ECPV AI+AE DVPADQ+++IALNA+LSR   WP
Sbjct: 23  MDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEADVPADQREFIALNAQLSRRADWP 82

Query: 59  SITKTKAPLPEAEEW---KDKTDKL 80
            +T+ + PL +   W   KDK D L
Sbjct: 83  RLTQVQPPLADHARWAQVKDKRDAL 107


>PA2715 [C] COG1146 Ferredoxin Pae Pseudomonas aeruginosa
          Length = 112

 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 2/87 (2%)

Query: 1   VDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEEDVPADQQQYIALNAELSR--SWP 58
           VDCF EGPNFL I PDECIDCA+C  ECPV AI AE++VP  Q+Q+IALN EL+   +W 
Sbjct: 23  VDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDEVPLGQRQFIALNGELAAHPNWT 82

Query: 59  SITKTKAPLPEAEEWKDKTDKLQYLQR 85
            IT+ K    + + W     KL  L R
Sbjct: 83  QITRKKPAPDDHDAWFGLPGKLAELDR 109