BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0211.p         (236 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1750 [E] COG0683 ABC-type branched-chain amino acid transport...    65   1e-10

>RSc1750 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 417

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 7/208 (3%)

Query: 1   VVAPNYEYGQSAVASFKLLLKQARPDVEFVSDQWPALGKIKA-DDVARAIRQSRPDGIFN 59
           ++  NY +G     + K  LK+ RPD+E V +    L ++K        I+ S  D +  
Sbjct: 181 LINQNYSFGHQVARAAKAYLKRKRPDIEIVGEDLHPLAQVKDFSPYVSKIKASGADTVIT 240

Query: 60  ATFGEDLQKFVQAGNRQQLFEGVRVVSMASAGAPS-LDPSQSEAIRDWLAIGYPWDQVSL 118
             +G DL   ++AG    L         +S G P+ + P+ ++ ++    +GY       
Sbjct: 241 GNWGSDLALLIKAGKDAGLNANFYTYYASSTGVPTAMGPAGADHVK---YVGYWNVNNDG 297

Query: 119 PEHQRFLEAYLKRFSERPQLSAVFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPL 178
            +    +E Y K++++   L A   YT +  +A  +K++   +   +  A+ G++  S  
Sbjct: 298 FKGADIVEGYKKKYNDDYYLMA--SYTGIALLAKAVKQARSAEPGKVARALEGMKVDSLN 355

Query: 179 GPVSFRALDQQASLGAFVGLVSQKDGRS 206
           GP   RA D Q     ++    + DG++
Sbjct: 356 GPFEMRASDHQGQQPLYIATWKKTDGKT 383