BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0188.p         (193 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1337 [R] COG0431 Predicted flavoprotein Rso Ralstonia solanac...   155   4e-38
BH3321 [R] COG0431 Predicted flavoprotein Bha Bacillus halodurans     132   4e-31
PA3446 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aerugi...   124   9e-29
YPO3623 [R] COG0431 Predicted flavoprotein Ype Yersinia pestis        124   1e-28
ZycbP [R] COG0431 Predicted flavoprotein EcZ Escherichia coli O1...   115   7e-26

>RSc1337 [R] COG0431 Predicted flavoprotein Rso Ralstonia solanacearum
          Length = 214

 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 124/175 (70%), Gaps = 2/175 (1%)

Query: 1   LAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAALATVA 60
           ++GSPSAPSRS RLL HV  +L + G     L++R LP  A+L A      +  ALA VA
Sbjct: 6   ISGSPSAPSRSARLLGHVRAQLERAGESADHLDLRALPADALLGAQTAHPAIAEALARVA 65

Query: 61  EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 120
            A  V++ATPVY+AAYSG+LK FLDLLPQ GL DK+VLP+ATGGS +H LA+DYALRPVL
Sbjct: 66  AAGVVILATPVYQAAYSGLLKTFLDLLPQSGLRDKVVLPIATGGSLAHTLAIDYALRPVL 125

Query: 121 SSLNPKHVLPSIYATEAQVTWSEEKGLVLDAPIEARVDEGVAQLSASL-LALHKA 174
           SSL  + +LP I+A +AQ+  +++ G  +D  ++ R+D+G+ ++  ++ LA H A
Sbjct: 126 SSLAARVILPGIFAADAQIGAADD-GFAVDPALQQRLDDGIERVHQAIALARHPA 179


>BH3321 [R] COG0431 Predicted flavoprotein Bha Bacillus halodurans
          Length = 178

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 1   LAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAALATVA 60
           + GSP+  SR++ L  +V   L + G     + VRDLP + +L  ++    +K   + VA
Sbjct: 7   IVGSPAITSRTSILTRYVEKALREAGVDVETIYVRDLPPEDLLHVNFQSEPLKRTHSMVA 66

Query: 61  EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 120
            A  V+VA+PVYKA+Y+GILK +LDLLPQ GL +K VLPL +GG+  H+LA+DY ++PVL
Sbjct: 67  AADGVIVASPVYKASYTGILKTYLDLLPQDGLRNKAVLPLMSGGTFGHLLAIDYGMKPVL 126

Query: 121 SSLNPKHVLPSIYATEAQVTWSEEKG--LVLDAPIEARVDEGVAQLSASL 168
           +SL  +H+L  +YA + Q+ W ++      +   I+ R+D+    L  ++
Sbjct: 127 NSLGARHILGGVYALDTQLEWQDKDAGTFRIAEEIKLRLDKATKDLMTAM 176


>PA3446 [R] COG0431 Predicted flavoprotein Pae Pseudomonas aeruginosa
          Length = 197

 Score =  124 bits (312), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 93/144 (64%)

Query: 1   LAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAALATVA 60
           +AGSPS  SRS  LL    D L++ G   A  +V D P + +LRA  +   V A    + 
Sbjct: 6   IAGSPSVRSRSGVLLERARDWLSRRGVEVASHQVLDFPAEDLLRARLDSPPVLALAEQIG 65

Query: 61  EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 120
            A  ++VATPVYKA++SG LK  LDLLP+  L  K+VLP ATGGS +HMLA+DYAL+PVL
Sbjct: 66  RADGLLVATPVYKASFSGALKVLLDLLPERALEHKVVLPFATGGSSAHMLAVDYALKPVL 125

Query: 121 SSLNPKHVLPSIYATEAQVTWSEE 144
           ++L  + VL  ++A + Q+ ++ E
Sbjct: 126 AALKAQEVLHGVFAVDKQIAYATE 149


>YPO3623 [R] COG0431 Predicted flavoprotein Ype Yersinia pestis
          Length = 193

 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 1   LAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAALATVA 60
           LAGSP  PSRS  LL+     L Q         + D     +LRA++N  +V A +A +A
Sbjct: 6   LAGSPRTPSRSAALLNLSQHWLQQQNVEVIPYTLHDFQADDLLRANFNSPDVSAFVAQLA 65

Query: 61  EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 120
            A  +++ATP+YKA++SG LK  LDLLP+  L  K+VLPLATGGS  HMLA+DYAL+PVL
Sbjct: 66  TADGLLIATPIYKASFSGALKTLLDLLPERALDHKVVLPLATGGSIGHMLAVDYALKPVL 125

Query: 121 SSLNPKHVLPSIYATEAQVTWSEEKGLVLDAPIEARVDEGVAQLSASLLALHKAAP 176
           ++L  + VL  ++  ++QV +  E+ + +      R++E    L +  LAL +  P
Sbjct: 126 TALKAQEVLHGVFVDDSQVVFHGEQ-VTVSTSATTRLEEA---LESFYLALGRRKP 177


>ZycbP [R] COG0431 Predicted flavoprotein EcZ Escherichia coli O157:H7
           EDL933
          Length = 191

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 90/139 (64%)

Query: 1   LAGSPSAPSRSTRLLHHVGDKLAQLGHRYARLEVRDLPGQAILRADWNDAEVKAALATVA 60
           LAG P  PSRS+ LL +  +KL  L        +++   + +L A ++   +      + 
Sbjct: 6   LAGXPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAAEDLLYARFDSPALHTFTEQLQ 65

Query: 61  EASAVVVATPVYKAAYSGILKAFLDLLPQFGLTDKLVLPLATGGSQSHMLALDYALRPVL 120
           +A  ++VATPVYKAAYSG LK  LDLLP+  L  K+VLPLATGG+ +H+LA+DYAL+PVL
Sbjct: 66  QADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVVLPLATGGTVAHLLAVDYALKPVL 125

Query: 121 SSLNPKHVLPSIYATEAQV 139
           S+L  + +L  ++A ++QV
Sbjct: 126 SALKAQEILHGVFADDSQV 144