BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0171.p (373 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1074 [E] COG0683 ABC-type branched-chain amino acid transport ... 473 e-133 ZlivJ [E] COG0683 ABC-type branched-chain amino acid transport s... 395 e-110 ECs4309 [E] COG0683 ABC-type branched-chain amino acid transport... 395 e-110 livJ [E] COG0683 ABC-type branched-chain amino acid transport sy... 395 e-110 livK [E] COG0683 ABC-type branched-chain amino acid transport sy... 394 e-109 >PA1074 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Pae Pseudomonas aeruginosa Length = 373 Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust. Identities = 225/374 (60%), Positives = 292/374 (78%), Gaps = 5/374 (1%) Query: 2 KFASRLTKI--ALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQI 59 K RL+++ A+A A FA+++ A+T+KIA+AGP+TG VAQYGDM +AGAL AIEQI Sbjct: 3 KGTQRLSRLFAAMAIAGFASYS--MAADTIKIALAGPVTGPVAQYGDMQRAGALMAIEQI 60 Query: 60 NAAGGANGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEG 119 N AGG NG + E V+ DDAC+PKQAVAVANK+V+ G+K+V+GHVCS ST PA+DIYE+EG Sbjct: 61 NKAGGVNGAQLEGVIYDDACDPKQAVAVANKVVNDGVKFVVGHVCSSSTQPATDIYEDEG 120 Query: 120 VVMITPSATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQ 179 V+MITPSATAP++T ++ +K IFRTIG D+ QGP A +++ E+ K K +AVLHDKQ YG+ Sbjct: 121 VLMITPSATAPEIT-SRGYKLIFRTIGLDNMQGPVAGKFIAERYKDKTIAVLHDKQQYGE 179 Query: 180 GVASSVKAALDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQ 239 G+A+ VK ++ A + V VFEG+NAGD D++A+++KLK GV FVYFGGYHPEMGL++RQ Sbjct: 180 GIATEVKKTVEDAGIKVAVFEGLNAGDKDFNALISKLKKAGVQFVYFGGYHPEMGLLLRQ 239 Query: 240 AREQGIKAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDP 299 A++ G+ A FMGPEGVGN +ITAIAG ASEGML TLP F DP N AL+ AF A +DP Sbjct: 240 AKQAGLDARFMGPEGVGNSEITAIAGDASEGMLATLPRAFEQDPKNKALIDAFKAKNQDP 299 Query: 300 NGPFQMPAYSGVKIIADAITGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFV 359 +G F +PAYS V +IA I A DPEKVA + AN+F+TP GN+ +D+KGDLK+F F Sbjct: 300 SGIFVLPAYSAVTVIAKGIEKAGEADPEKVAEALRANTFETPTGNLGFDEKGDLKNFDFT 359 Query: 360 VFTWHKDASKTEAK 373 V+ WHKDA++TE K Sbjct: 360 VYEWHKDATRTEVK 373 >ZlivJ [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component EcZ Escherichia coli O157:H7 EDL933 Length = 386 Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/365 (51%), Positives = 259/365 (70%), Gaps = 3/365 (0%) Query: 9 KIALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGANGN 68 K LA AF+ +A AE +K+A+ G M+G VAQYGD GA A+ INA GG GN Sbjct: 25 KALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGN 84 Query: 69 KFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSAT 128 K + V DDAC+PKQAVAVANK+V+ GIKYVIGH+CS ST PASDIYE+EG++MITP+AT Sbjct: 85 KLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAAT 144 Query: 129 APQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAA 188 AP+LT A+ ++ I RT G D QGP AA+Y++EK+KP+++A++HDKQ YG+G+A +V+ Sbjct: 145 APELT-ARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 203 Query: 189 LDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAV 248 L VV F+GI AG+ D+S +V +LK + +DFVY+GGYHPEMG I+RQAR G+K Sbjct: 204 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ 263 Query: 249 FMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQMPAY 308 FMGPEGV N ++ IAG ++EG+LVT P ++ PAN +V A A K+DP+G F Y Sbjct: 264 FMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTY 323 Query: 309 SGVKIIADAITGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVFTWHKDAS 368 + ++ + + +S DP ++A Y+ ANS T +G + +D+KGDLK F+F VF WH + + Sbjct: 324 AALQSLQAGLN--QSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGT 381 Query: 369 KTEAK 373 T+AK Sbjct: 382 ATDAK 386 >ECs4309 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Ecs Escherichia coli O157:H7 Length = 386 Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/365 (51%), Positives = 259/365 (70%), Gaps = 3/365 (0%) Query: 9 KIALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGANGN 68 K LA AF+ +A AE +K+A+ G M+G VAQYGD GA A+ INA GG GN Sbjct: 25 KALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGN 84 Query: 69 KFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSAT 128 K + V DDAC+PKQAVAVANK+V+ GIKYVIGH+CS ST PASDIYE+EG++MITP+AT Sbjct: 85 KLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAAT 144 Query: 129 APQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAA 188 AP+LT A+ ++ I RT G D QGP AA+Y++EK+KP+++A++HDKQ YG+G+A +V+ Sbjct: 145 APELT-ARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 203 Query: 189 LDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAV 248 L VV F+GI AG+ D+S +V +LK + +DFVY+GGYHPEMG I+RQAR G+K Sbjct: 204 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ 263 Query: 249 FMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQMPAY 308 FMGPEGV N ++ IAG ++EG+LVT P ++ PAN +V A A K+DP+G F Y Sbjct: 264 FMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTY 323 Query: 309 SGVKIIADAITGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVFTWHKDAS 368 + ++ + + +S DP ++A Y+ ANS T +G + +D+KGDLK F+F VF WH + + Sbjct: 324 AALQSLQAGLN--QSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGT 381 Query: 369 KTEAK 373 T+AK Sbjct: 382 ATDAK 386 >livJ [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Eco Escherichia coli K12 Length = 386 Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/365 (51%), Positives = 259/365 (70%), Gaps = 3/365 (0%) Query: 9 KIALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGANGN 68 K LA AF+ +A AE +K+A+ G M+G VAQYGD GA A+ INA GG GN Sbjct: 25 KALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGN 84 Query: 69 KFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSAT 128 K + V DDAC+PKQAVAVANK+V+ GIKYVIGH+CS ST PASDIYE+EG++MITP+AT Sbjct: 85 KLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAAT 144 Query: 129 APQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAA 188 AP+LT A+ ++ I RT G D QGP AA+Y++EK+KP+++A++HDKQ YG+G+A +V+ Sbjct: 145 APELT-ARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDG 203 Query: 189 LDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAV 248 L VV F+GI AG+ D+S +V +LK + +DFVY+GGYHPEMG I+RQAR G+K Sbjct: 204 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ 263 Query: 249 FMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQMPAY 308 FMGPEGV N ++ IAG ++EG+LVT P ++ PAN +V A A K+DP+G F Y Sbjct: 264 FMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTY 323 Query: 309 SGVKIIADAITGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVFTWHKDAS 368 + ++ + + +S DP ++A Y+ ANS T +G + +D+KGDLK F+F VF WH + + Sbjct: 324 AALQSLQAGLN--QSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGT 381 Query: 369 KTEAK 373 T+AK Sbjct: 382 ATDAK 386 >livK [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Eco Escherichia coli K12 Length = 369 Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/368 (51%), Positives = 257/368 (69%), Gaps = 1/368 (0%) Query: 6 RLTKIALAAATFAAFAGVAHAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGA 65 R K +A A + A A+ +K+A+ G M+G +AQ+GDM GA AI+ INA GG Sbjct: 3 RNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI 62 Query: 66 NGNKFEAVMMDDACEPKQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITP 125 G+K V DDAC+PKQAVAVANKIV+ GIKYVIGH+CS ST PASDIYE+EG++MI+P Sbjct: 63 KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISP 122 Query: 126 SATAPQLTEAKPHKFIFRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSV 185 AT P+LT+ + ++ I RT G D QGP AA+Y++E +KP+++A++HDKQ YG+G+A SV Sbjct: 123 GATNPELTQ-RGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSV 181 Query: 186 KAALDAAKVPVVVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGI 245 + L AA VV F+GI AG+ D+SA++ +LK + +DFVY+GGY+PEMG ++RQAR G+ Sbjct: 182 QDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGL 241 Query: 246 KAVFMGPEGVGNKDITAIAGPASEGMLVTLPADFAADPANAALVKAFAAAKRDPNGPFQM 305 K FMGPEGVGN ++ IAG A+EGMLVT+P + DPAN +V A A K+DP+GP+ Sbjct: 242 KTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKDPSGPYVW 301 Query: 306 PAYSGVKIIADAITGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVFTWHK 365 Y+ V+ +A A+ S +P + + AN T IG + +D+KGDLK F F VF WH Sbjct: 302 ITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHA 361 Query: 366 DASKTEAK 373 D S T AK Sbjct: 362 DGSSTAAK 369