BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0169.p (408 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport... 472 e-133 PA1072 [E] COG4177 ABC-type branched-chain amino acid transport ... 455 e-128 STM3562 [E] COG4177 ABC-type branched-chain amino acid transport... 442 e-124 livM [E] COG4177 ABC-type branched-chain amino acid transport sy... 432 e-121 ZlivM [E] COG4177 ABC-type branched-chain amino acid transport s... 431 e-120 >YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ype Yersinia pestis Length = 428 Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust. Identities = 246/412 (59%), Positives = 304/412 (73%), Gaps = 10/412 (2%) Query: 4 TFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLN----THWTPVLVAVLAVFLFQLAKPV 59 F NA+ ++ V VL ++G+QLQL+G R+V+ W + L VF FQL +P+ Sbjct: 5 NFVNAIISSFVLLVLASFVMGLQLQLDGTRLVVQGASEVRWLWIGAGCLVVFCFQLVRPL 64 Query: 60 LSRSSAGIK-----LPALPRMQPRQQRAAVMILLMAALVWPFFGSRGYVDVMTLALIYVV 114 + + + LP+ PRQ + ++++AA+ WPF SRG VD+ TL LIYV+ Sbjct: 65 IQQGIKKVSGPAWVLPSFDGTTPRQ-KLLAAVVIIAAVAWPFLVSRGSVDIATLTLIYVM 123 Query: 115 LGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASALFGFLLG 174 LGLGLN+VVG +GLL LGY GFYA+GAYTYAL N Y+GL FWE +PLA +AL GFLLG Sbjct: 124 LGLGLNVVVGLSGLLVLGYGGFYAIGAYTYALLNHYYGLGFWESLPLAGITAALSGFLLG 183 Query: 175 FPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMARNPVTEG 234 FPVLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+G+S IPKPT+FGL +R G Sbjct: 184 FPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAKDGG 243 Query: 235 GTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRS 294 TFH FGL+Y H +IFLY +ALL+V+ T FV +RLLRMP+GRAWEALREDEIACRS Sbjct: 244 WDTFHNFFGLTYDPSHRIIFLYLVALLLVILTLFVINRLLRMPLGRAWEALREDEIACRS 303 Query: 295 LGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQL 354 LG++PTK+KL+AFT+ AAFAG AG+ FAARQG V+PESFTF+ESA +LAIVVLGGMGSQ Sbjct: 304 LGLSPTKIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFVESAFVLAIVVLGGMGSQF 363 Query: 355 GVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 VILAA+LL V EL R Y ML+ G +MVLMM+WRPQGLLP RP ++L Sbjct: 364 AVILAAVLLVVSRELMRDLNAYSMLLLGALMVLMMIWRPQGLLPMKRPQLKL 415 >PA1072 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 417 Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust. Identities = 259/418 (61%), Positives = 319/418 (76%), Gaps = 15/418 (3%) Query: 1 MPETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVL-----NTHWTPVLVAVLAVFLFQL 55 M ++ K A+ +AL+ +++ P+LG++L+ G ++ + T WT + A LA+F++QL Sbjct: 1 MSQSLKRALFSALLVILVSYPILGLKLRTVGIKLEVLGADAQTLWT-IAAAALAMFVWQL 59 Query: 56 AK---PVLSRSSAGIKLPALPRMQ----PRQQRAAVMILLMAALVWPFFGSRGYVDVMTL 108 + P+ G K+ P QR AV+ L++ A VWPFF SRG VD+ TL Sbjct: 60 FRDRIPLKLGRGVGYKVNGSGLKNFLSLPSTQRWAVLALVVVAFVWPFFASRGAVDIATL 119 Query: 109 ALIYVVLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASAL 168 LIYV+LG+GLNIVVG AGLLDLGYVGFYAVGAYTYAL +Y G FW +P+A +AL Sbjct: 120 ILIYVMLGIGLNIVVGLAGLLDLGYVGFYAVGAYTYALLAEYAGFGFWTALPIAGMMAAL 179 Query: 169 FGFLLGFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMAR 228 FGFLLGFPVLRLRGDYLAIVTLGFGEIIR+LL NMT ITGGP+G+ IPKPT+FGL R Sbjct: 180 FGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTEITGGPNGIGSIPKPTLFGLTFER 239 Query: 229 NPVTEGGTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALRED 288 EG TFH+ FG++Y + VI LY +ALL+VL FV +RL+RMP+GRAWEALRED Sbjct: 240 R-APEGMQTFHEFFGIAYNTNYKVILLYVVALLLVLLALFVINRLMRMPIGRAWEALRED 298 Query: 289 EIACRSLGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLG 348 E+ACR+LG+NPT VKLSAFT+GA+FAG AGSFFAARQGLVTPESFTFIESA+ILAIVVLG Sbjct: 299 EVACRALGLNPTIVKLSAFTIGASFAGFAGSFFAARQGLVTPESFTFIESAMILAIVVLG 358 Query: 349 GMGSQLGVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 GMGSQLGVILAA+++ +L E+ R F EYRMLIFGL M++MM+WRPQGLLP RPH+EL Sbjct: 359 GMGSQLGVILAAVVMVLLQEM-RGFNEYRMLIFGLTMIVMMIWRPQGLLPMQRPHLEL 415 >STM3562 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 425 Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust. Identities = 239/415 (57%), Positives = 303/415 (73%), Gaps = 8/415 (1%) Query: 2 PETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNT----HWTPVLVAVLAVFLFQLAK 57 P A+ +A + VL +G+QL+L+G ++V++T W + + VF FQL + Sbjct: 3 PMHIAMALFSAAMFFVLAGVFMGVQLELDGTKLVVDTAADIRWQWIFIGTAVVFFFQLLR 62 Query: 58 PVLSRSSAGIKLPA--LPRMQPR--QQRAAVMILLMAALVWPFFGSRGYVDVMTLALIYV 113 P+ ++ + P LP + +Q+ +M LL+ A+ WPF SRG VD+ T+ +IY+ Sbjct: 63 PMFQKAVKHVSGPKFILPAIDGSTVKQKLFLMALLVIAVAWPFMVSRGSVDIATMTMIYI 122 Query: 114 VLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASALFGFLL 173 +LGLGLN+VVG +GLL LGY GFYA+GAYT+AL N Y+GL FW C+PLA SA GFLL Sbjct: 123 ILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGFLL 182 Query: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMARNPVTE 233 GFPVLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+G+S IPKPT+FGL +R+ Sbjct: 183 GFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRSTREG 242 Query: 234 GGTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACR 293 G TF FG+ Y VIFLY +ALL+V+ + FV +RLLRMP+GRAWEALREDEIACR Sbjct: 243 GWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACR 302 Query: 294 SLGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQ 353 SLG++PT++KL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ Sbjct: 303 SLGLSPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQ 362 Query: 354 LGVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 VILAA+LL V EL R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 363 FAVILAAVLLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKS 417 >livM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Eco Escherichia coli K12 Length = 425 Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust. Identities = 239/415 (57%), Positives = 299/415 (72%), Gaps = 8/415 (1%) Query: 2 PETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNT----HWTPVLVAVLAVFLFQLAK 57 P A+ +A + VL +G+QL+L+G ++V++T W V + VF FQL + Sbjct: 3 PMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLR 62 Query: 58 PVLSRSSAGIKLPA--LPRMQPR--QQRAAVMILLMAALVWPFFGSRGYVDVMTLALIYV 113 P + + P LP + +Q+ ++ LL+ A+ WPF SRG VD+ TL +IY+ Sbjct: 63 PAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYI 122 Query: 114 VLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASALFGFLL 173 +LGLGLN+VVG +GLL LGY GFYA+GAYT+AL N Y+GL FW C+P+A +A GFLL Sbjct: 123 ILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLL 182 Query: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMARNPVTE 233 GFPVLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+G+S IPKPT+FGL +R Sbjct: 183 GFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREG 242 Query: 234 GGTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACR 293 G TF FGL Y VIFLY +ALL+V+ + FV +RLLRMP+GRAWEALREDEIACR Sbjct: 243 GWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACR 302 Query: 294 SLGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQ 353 SLG++P ++KL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ Sbjct: 303 SLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQ 362 Query: 354 LGVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 VILAAILL V EL R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 363 FAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417 >ZlivM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 425 Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust. Identities = 239/415 (57%), Positives = 298/415 (71%), Gaps = 8/415 (1%) Query: 2 PETFKNAVTAALVTAVLTIPLLGMQLQLEGYRVVLNT----HWTPVLVAVLAVFLFQLAK 57 P A+ +A + VL +G+QL+L+G ++V++T W V + VF FQL + Sbjct: 3 PMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIRWQWVFIGTAVVFFFQLLR 62 Query: 58 PVLSRSSAGIKLPA--LPRMQPR--QQRAAVMILLMAALVWPFFGSRGYVDVMTLALIYV 113 P + + P LP + +Q+ ++ LL+ A+ WPF SRG VD+ TL +IY+ Sbjct: 63 PAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYI 122 Query: 114 VLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAASALFGFLL 173 +LGLGLN+VVG +GLL LGY GFYA+GAYT+AL N Y+GL FW C+P+A +A GFLL Sbjct: 123 ILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLL 182 Query: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMARNPVTE 233 GFPVLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+G+S IPKPT FGL +R Sbjct: 183 GFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRTAREG 242 Query: 234 GGTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACR 293 G TF FGL Y VIFLY +ALL+V+ + FV +RLLRMP+GRAWEALREDEIACR Sbjct: 243 GWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACR 302 Query: 294 SLGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQ 353 SLG++P ++KL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ Sbjct: 303 SLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQ 362 Query: 354 LGVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 VILAAILL V EL R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 363 FAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417