BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0166.p         (101 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM3560 [E] COG0410 ABC-type branched-chain amino acid transport...   162   1e-40
ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s...   162   2e-40
ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport...   162   2e-40
livF [E] COG0410 ABC-type branched-chain amino acid transport sy...   162   2e-40
YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport...   158   3e-39

>STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Sty Salmonella typhimurium LT2
          Length = 237

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 88/99 (88%)

Query: 1   MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNA 60
           MSGGEQQMLAIGRALMS+PRLLLLDEP+LGLAP++I QIFD I  +RE G+T+FLVEQNA
Sbjct: 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197

Query: 61  NKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 99
           N+AL +ADRGYVLENGHVV+SDTG  LLAN  VR AYLG
Sbjct: 198 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 236


>ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component EcZ Escherichia coli O157:H7 EDL933
          Length = 241

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 87/99 (87%)

Query: 1   MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNA 60
           MSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIFD I  +RE G+T+FLVEQNA
Sbjct: 142 MSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 201

Query: 61  NKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 99
           N+AL +ADRGYVLENGHVV+SDTG  LLAN  VR AYLG
Sbjct: 202 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240


>ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Ecs Escherichia coli O157:H7
          Length = 241

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 87/99 (87%)

Query: 1   MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNA 60
           MSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIFD I  +RE G+T+FLVEQNA
Sbjct: 142 MSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 201

Query: 61  NKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 99
           N+AL +ADRGYVLENGHVV+SDTG  LLAN  VR AYLG
Sbjct: 202 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240


>livF [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Eco Escherichia coli K12
          Length = 241

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 87/99 (87%)

Query: 1   MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNA 60
           MSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIFD I  +RE G+T+FLVEQNA
Sbjct: 142 MSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 201

Query: 61  NKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 99
           N+AL +ADRGYVLENGHVV+SDTG  LLAN  VR AYLG
Sbjct: 202 NQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240


>YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Ype Yersinia pestis
          Length = 233

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 88/99 (88%)

Query: 1   MSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIRESGVTVFLVEQNA 60
           MSGGEQQMLAIGRALMS+P+LLLLDEP+LGLAP++I QIFD I+ +RE G+T+FLVEQNA
Sbjct: 134 MSGGEQQMLAIGRALMSQPKLLLLDEPSLGLAPIIILQIFDTIQQLREEGMTIFLVEQNA 193

Query: 61  NKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 99
           N+AL +ADRGYVLENG +V+ DTGA LLAN  VR AYLG
Sbjct: 194 NQALKLADRGYVLENGRIVLEDTGAALLANEAVRSAYLG 232