BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0162.p (504 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso ... 292 2e-78 PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 273 7e-73 PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 252 2e-66 PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 248 2e-65 PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae... 246 1e-64 >RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia solanacearum Length = 429 Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 172/414 (41%), Positives = 229/414 (55%), Gaps = 20/414 (4%) Query: 1 MRKPFKRLLALVALLGAAGMSHLAHAADEGQLIKRGEYLAIAGDCAACHSQKGRAPFSGG 60 MR+ L+++LGAA + A A + IKRGEYLAIAGDC ACH+ G PF+GG Sbjct: 1 MRRAKAASFLLLSVLGAAAAARDADAPADAAQIKRGEYLAIAGDCVACHTAPGGKPFAGG 60 Query: 61 HPISSP-LGTIYSTNITPSKTAGIGSYTRDQFAAALRQGVRADGSQLYPAMPYTAYARLN 119 P+ P LGTIYS+NITP GIG + + F A+RQGV DG LYPAMPY +YA++N Sbjct: 61 LPLQIPMLGTIYSSNITPDPKTGIGKWRYEDFERAVRQGVSDDGENLYPAMPYPSYAKIN 120 Query: 120 DDDVTALYTYFMQGVAAVDQAAPATDLPFPFNIRLSMKAWNWLFLDKKPFEPDPSQSAQW 179 D D+ LY YF GVAAV A P + +P N+R +K WN FL + P+ P + W Sbjct: 121 DADMRDLYAYFRYGVAAVQYAPPPGTIRWPLNMRWPLKLWNLAFLKRAPYLPKGDMTPTW 180 Query: 180 NRGAYLVQGLAHCSTCHTPRNFLMAEQ-LERR----LQGGSLGTWYAPDITPAALQAKPA 234 NRGAYL QGLAHC TCHTPR F M E+ ++ R L G +L W A +IT + Sbjct: 181 NRGAYLAQGLAHCGTCHTPRGFAMQEKAMDERGKGYLAGSTLAGWSAYNITSDPVSGIGG 240 Query: 235 WTREMLADYLASGHAANGATAAGPMLEAIEMSFSRLRREDLEAMASYLLP-PTAATAAPA 293 W E + YL +G AAGPM EA++ SFSR+ D+ A+A YL P +T A Sbjct: 241 WKPEQIVQYLRTGSVPGIGQAAGPMGEAVQHSFSRMTERDVRAIAEYLRTVPAVSTGAQR 300 Query: 294 VN----KPPAGLTPVQGDDTPQALAALSPGARVYMNNCASCHNTAGQGL--NGLPPLQSH 347 P + ++G + A AR+Y+ NCA+CH G+G PPL + Sbjct: 301 ARHGWGTPATDVIALRGKPIETTIDA----ARLYLGNCATCHQADGRGTPDGYYPPLLHN 356 Query: 348 PVLRQPNGDNVVMAILEGVLPEHGQ---GMIGFAHTLNDEQVAAVTNYLLQDIG 398 + + N+V +L G+ G GM F L+D Q+AA+ NY+ + G Sbjct: 357 SAVGARDTRNLVQVMLHGIERRAGDRHIGMPAFGRQLSDAQLAALANYVTRQFG 410 >PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 415 Score = 273 bits (698), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 159/389 (40%), Positives = 215/389 (55%), Gaps = 21/389 (5%) Query: 32 LIKRGEYLAIAGDCAACHSQKGRAPFSGGHPISSPLGTIYSTNITPSKTAGIGSYTRDQF 91 L+KRGEYLA A DC ACH+ +G APF+GG PI SP GTIY TNITP K GIG+Y+ D+F Sbjct: 29 LVKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNITPDKEHGIGAYSADEF 88 Query: 92 AAALRQGVRADGSQLYPAMPYTAYARLNDDDVTALYTYFMQGVAAVDQAAPATDLPFPFN 151 AAL +G R DG+ LYPAMPYT+Y + +D A+Y Y M + + AP T L FPFN Sbjct: 89 FAALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYLM-AQEPIARPAPQTSLSFPFN 147 Query: 152 IRLSMKAWNWLFLDKKPFEPDPSQSAQWNRGAYLVQGLAHCSTCHTPRNFLMAEQLERRL 211 +R+ + WN L+ +P+ +S W RG Y+V+ L HC CHTPRN A + ++RL Sbjct: 148 VRMGLAGWNLLYGKSVRLQPEEGRSEAWKRGQYMVEVLGHCGECHTPRNLAGALEQDKRL 207 Query: 212 QGGSLGTWYAPDITPAALQAKPAWTREMLADYLASGHAANGATAAGPMLEAIEMSFSRLR 271 GG L + AP + P L A+ WT+ LA +L G +A G + M + S L Sbjct: 208 SGGLLNGYLAPSLLPGDLAAR-GWTQPDLASFLKHGMSAQG-SMFNEMFPVVHHSTQHLD 265 Query: 272 REDLEAMASYLLPPTAATAAPAVNKPPAGLTPVQGDDTPQALAALSPGARVYMNNCASCH 331 DL AMA+YLL PPA + VQ Q + G + Y+N CA CH Sbjct: 266 DGDLAAMATYLL---------GDQPPPAKV--VQALPEAQLNDSGKRGRQQYLNVCAGCH 314 Query: 332 NTAGQGLNGLP-PLQSHPVLRQPNGDNVVMAILEGVLP------EHGQGMIGFAHTLNDE 384 G+G + + + LR + N++ I +G++ E Q M GFA L+DE Sbjct: 315 GGEGEGKPHIAVAMNGNTTLRLQDPRNLLRVIEDGIVEQQFTGFERMQPMPGFAGKLDDE 374 Query: 385 QVAAVTNYLLQDIGGSKVSVTTQRVATLR 413 Q+ + NYL Q GG + Q+VA L+ Sbjct: 375 QLTDLLNYLRQTWGGLPGDLGPQQVAQLK 403 >PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 433 Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 155/381 (40%), Positives = 208/381 (54%), Gaps = 23/381 (6%) Query: 31 QLIKRGEYLAIAGDCAACHSQKGRAPFSGGHPISSPLGTIYSTNITPSKTAGIGSYTRDQ 90 + I RGE LA GDCA CH+++G +GG + +P GTIYS+N+TP + +GIG ++ Sbjct: 44 EQIARGERLAALGDCAVCHTREGGPRNAGGRALPTPFGTIYSSNLTPDRASGIGGWSYPA 103 Query: 91 FAAALRQGVRADGSQLYPAMPYTAYARLNDDDVTALYTYFMQGVAAVDQAAPATDLPFPF 150 F A+R GV DGS LYPA PYTA+ R D+D+ ALY Y M AV PA LPFPF Sbjct: 104 FERAMRHGVARDGSYLYPAFPYTAFTRTRDEDLKALYAYLMS-QPAVHSETPANQLPFPF 162 Query: 151 NIRLSMKAWNWLFLDKKPFEPDPSQSAQWNRGAYLVQGLAHCSTCHTPRNFLMAEQL-ER 209 + R M WN LFLD + +P+++ QWNRGAYL +GL HCS CH+PRN L AE+ Sbjct: 163 DQRQLMAGWNLLFLDPGAYRDEPTRNQQWNRGAYLAEGLGHCSACHSPRNALGAEKSGSA 222 Query: 210 RLQGGSLGTWYAPDITPAALQAKPAWTREMLADYLASGHAANGATAAGPMLEAIEMSFSR 269 GG W AP + A+ A AW+ E L YL G++A A+GPM + ++ Sbjct: 223 HFAGGEAEGWTAPALN-ASSPAPIAWSEEALYAYLRHGYSAYHGVASGPMAPVVGEGLAK 281 Query: 270 LRREDLEAMASYLLPPTAATAAPAVNKPPAGLTPVQGDD--TPQALAALSP----GARVY 323 EDL A+A YL AA PAG T Q Q + P GAR++ Sbjct: 282 QPDEDLRALAHYLASYAAA---------PAGETDQQQAQRLDRQGYGRVQPPSGSGARLF 332 Query: 324 MNNCASCHNTA-GQGLNGL-PPLQSHPVLRQPNGDNVVMAILEGV-LPEHGQ--GMIGFA 378 C +CH+ G G+ P L + + + DN++ IL+G+ P G M GF Sbjct: 333 AGACLACHHDGDGPRFFGVRPSLALNSNVHADSPDNLLRIILDGIHSPATGDLGYMPGFR 392 Query: 379 HTLNDEQVAAVTNYLLQDIGG 399 H+L+D QVA + NYL + G Sbjct: 393 HSLDDRQVATLANYLRERFAG 413 >PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 439 Score = 248 bits (634), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 206/399 (51%), Gaps = 25/399 (6%) Query: 32 LIKRGEYLAIAGDCAACHSQKGRAPFSGGHPISSPLGTIYSTNITPSKTAGIGSYTRDQF 91 L+++GEYLA AGDC ACH+ + PF+GG P+ +P+G +YSTNITP + GIG Y+ + F Sbjct: 27 LVRQGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITPDRKTGIGDYSFEDF 86 Query: 92 AAALRQGVRADGSQLYPAMPYTAYARLNDDDVTALYTYFMQGVAAVDQAAPATDLPFPFN 151 A+R GV G LYPAMPY +YAR+++ D+ ALY YFM GV V+Q A+D+P+P + Sbjct: 87 DRAVRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWPLS 146 Query: 152 IRLSMKAWNWLFL-DKKPFEPDPSQSAQWNRGAYLVQGLAHCSTCHTPRNFLMAEQLERR 210 +R + W W F + K F+ Q RGAYLV+GL HC CHTPR M E+ Sbjct: 147 MRWPLAFWRWTFAPEVKDFQAAAGQDPVLARGAYLVEGLGHCGACHTPRGLGMQEKALAA 206 Query: 211 LQGGS-------LGTWYAPDITPAALQAKPAWTREMLADYLASGHAANGATAAGPMLEAI 263 G + L W A + +W+ L +L +G + A G M + + Sbjct: 207 SDGAAYLSGSAPLENWIAKSLRGDHRTGLGSWSEADLVSFLRTGRSERSAVFGG-MSDVV 265 Query: 264 EMSFSRLRREDLEAMASYL--LPPTAATAAPAVNKPPAGLTPVQGDDTPQALAALSPGAR 321 S + DL A+A YL LPP P V GDD+ GA Sbjct: 266 VHSMQYMTDADLTAIARYLKSLPPADPADQPHVYDESVAQALFHGDDS-------KTGAA 318 Query: 322 VYMNNCASCHNTAGQGL-NGLPPLQSHPVLRQPNGDNVVMAILE-GVLPEHGQG-----M 374 +Y++NC +CH T G+G P L +PV+ + ++V +L+ G LP Q M Sbjct: 319 LYVDNCGACHRTDGKGYARVFPALAGNPVVTGSDPTSLVHIVLKGGTLPATHQAPSSFTM 378 Query: 375 IGFAHTLNDEQVAAVTNYLLQDIGGSKVSVTTQRVATLR 413 F +ND+++A V N++ G SV+ V LR Sbjct: 379 PPFGWRMNDQEIADVVNFIRTSWGNQAPSVSVDEVRRLR 417 >PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 441 Score = 246 bits (627), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 163/451 (36%), Positives = 223/451 (49%), Gaps = 34/451 (7%) Query: 1 MRKPFKRLLALVALLGAAGMSHLAHAADEGQLIKRGEYLAIAGDCAACHSQKGRAPFSGG 60 M F RL L AL + H + + LI++G Y+A GDC ACH+ AP +GG Sbjct: 1 MPASFPRLGLLGALCSIVPLLHASEPTTDAALIEKGRYVAQLGDCIACHTGPQGAPMAGG 60 Query: 61 HPISSPLGTIYSTNITPSKTAGIGSYTRDQFAAALRQGVRADGSQLYPAMPYTAYARLND 120 + +P+GTIYSTNITP + GIG Y+ ++F A+R+GV A+G LYPAMPY +YA++++ Sbjct: 61 LELKTPMGTIYSTNITPDRETGIGRYSFEEFDRAMRKGVTAEGVNLYPAMPYPSYAKISE 120 Query: 121 DDVTALYTYFMQGVAAVDQAAPATDLPFPFNIRLSMKAWNWLFLDKKPFEPDPSQSAQWN 180 +D+ ALY Y M GV V QA + + +PFN R + WNW FLD PF P N Sbjct: 121 EDMRALYAYLMHGVQPVTQANTPSAMSWPFNQRWGLSLWNWAFLDDAPFTPSSDADPVIN 180 Query: 181 RGAYLVQGLAHCSTCHTPRNFLMAEQLERRLQGGSLGTWYAPDITPAALQA---KPAWTR 237 RGAYLVQGL HC CHTPR +A Q + + G G +Y T QA + WT Sbjct: 181 RGAYLVQGLGHCGACHTPRG--IAFQEKAMSEAGRSGQFYLAGETVEQWQALSLRNLWTV 238 Query: 238 EMLADYLASGHAANGATAAGPMLEAIEMSFSRLRREDLEAMASYLLPPTAATAAPAVNKP 297 E L +G AT +G M + I S +DL A+ASYL Sbjct: 239 EDTVQLLKTGQ-NRFATVSGSMTDVIHHSTQHFSDDDLLAIASYL------------KSL 285 Query: 298 PAGLTPVQGDDTPQALAA-----LSPGARVYMNNCASCHNTAGQGLNGL-PPLQSHPVLR 351 PAG + D+ + LAA S G Y C+ CH G G+ G+ PPL +P + Sbjct: 286 PAGKDDLPMPDSERPLAAPVDLYSSRGGLGYAQFCSDCHRKDGSGVPGMFPPLAGNPTVA 345 Query: 352 QPNGDNVVMAILEGV----LPEHGQ--GMIGFAHTLNDEQVAAVTNYLLQDIGGSKVSVT 405 N ++ L G H + M GFA L D ++A + +++ G S+ Sbjct: 346 SANPSTLLHITLTGWKTAQTATHSRVYTMPGFAQ-LEDREIAEILSFVRSSWGNQGSSID 404 Query: 406 TQRVATLR---AGGXKPGGFFLAADLLFTLA 433 +V LR G P F++ L LA Sbjct: 405 AGQVKKLRQRIEAGNGPATTFVSPRLADMLA 435