BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0156.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and rela...   102   4e-22
VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and rela...    95   5e-20
cheA [NT] COG0643 Chemotaxis protein histidine kinase and relate...    77   2e-14
ZcheA [NT] COG0643 Chemotaxis protein histidine kinase and relat...    77   2e-14
ECs2598 [NT] COG0643 Chemotaxis protein histidine kinase and rel...    77   2e-14

>PA1458 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Pae Pseudomonas aeruginosa
          Length = 753

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 69/104 (66%)

Query: 1   MLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACH 60
           +L+DF+VEA E+   + E L+ LE  PDD+++LNA+FR FHT+KGGAGF+ L A+V  CH
Sbjct: 9   ILQDFLVEAGEILEQLSEQLVELESRPDDMDLLNAIFRGFHTVKGGAGFLQLNALVECCH 68

Query: 61  LTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAP 104
           + EN+FD LR G+  V+   ++  LQA   V    +++   + P
Sbjct: 69  IAENVFDILRKGERRVSSELMDVVLQALDTVNAMFDQVREQSEP 112


>VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Vch Vibrio cholerae
          Length = 785

 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 65/95 (68%)

Query: 1   MLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACH 60
           +L+DF+VEA E+   + E L+ LE +P+D ++LNA+FR FHT+KGGAGF+ L  +V  CH
Sbjct: 9   ILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVETCH 68

Query: 61  LTENLFDALRTGKAPVTPLAIEAALQASGFVADQL 95
             EN+FD LR G+  V+P  ++  L+A   V +Q 
Sbjct: 69  GAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQF 103


>cheA [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Eco Escherichia coli K12
          Length = 654

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 3   KDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACHLT 62
           + F  EA EL  ++E+HLL L+    D E LNA+FRA H+IKGGAG      +    HL 
Sbjct: 10  QTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSIKGGAGTFGFSVLQETTHLM 69

Query: 63  ENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKDILTQAI 122
           ENL D  R G+  +    I   L+    + +QL+       PD+ AS     + +   A+
Sbjct: 70  ENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDA-ASFDYICQALRQLAL 128

Query: 123 EGKSEAPAAA 132
           E K E P+A 
Sbjct: 129 EAKGETPSAV 138


>ZcheA [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases EcZ Escherichia coli O157:H7 EDL933
          Length = 654

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 3   KDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACHLT 62
           + F  EA EL  ++E+HLL L+    D E LNA+FRA H+IKGGAG      +    HL 
Sbjct: 10  QTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSIKGGAGTFGFSVLQETTHLM 69

Query: 63  ENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKDILTQAI 122
           ENL D  R G+  +    I   L+    + +QL+       PD+ AS     + +   A+
Sbjct: 70  ENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDA-ASFDYICQALRQLAL 128

Query: 123 EGKSEAPAAA 132
           E K E P+A 
Sbjct: 129 EAKGETPSAV 138


>ECs2598 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Ecs Escherichia coli O157:H7
          Length = 654

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 3   KDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACHLT 62
           + F  EA EL  ++E+HLL L+    D E LNA+FRA H+IKGGAG      +    HL 
Sbjct: 10  QTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSIKGGAGTFGFSVLQETTHLM 69

Query: 63  ENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKDILTQAI 122
           ENL D  R G+  +    I   L+    + +QL+       PD+ AS     + +   A+
Sbjct: 70  ENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDA-ASFDYICQALRQLAL 128

Query: 123 EGKSEAPAAA 132
           E K E P+A 
Sbjct: 129 EAKGETPSAV 138