BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0153.p         (78 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2427 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...   111   3e-25
RSc1348 [K] COG0583 Transcriptional regulator Rso Ralstonia sola...    64   1e-10

>RSc2427 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 313

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 60/75 (80%)

Query: 4   GCGPFXGIAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRK 63
           G G   G+AFD ERDR LRAIPAGHLFGTNV+ + +KQGAYLRG+VYTFIEL AP L RK
Sbjct: 239 GIGIVAGVAFDPERDRNLRAIPAGHLFGTNVTHLGIKQGAYLRGFVYTFIELFAPALTRK 298

Query: 64  LIAQVMEGEKDMYEL 78
           L+ Q++ GE + YEL
Sbjct: 299 LLEQLLAGEHEAYEL 313


>RSc1348 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 327

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 43/66 (65%)

Query: 4   GCGPFXGIAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRK 63
           G G    +A+D  +D  L  I A HLF  N +RVA+++GAYLRGY + FI + AP L+R+
Sbjct: 239 GVGIIASMAYDGRKDDNLVCIGADHLFEPNTTRVAVRRGAYLRGYAHDFIGMFAPHLSRE 298

Query: 64  LIAQVM 69
            +A+ +
Sbjct: 299 AVAEAV 304