BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0150.p (273 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 248 1e-65 mll2686 [K] COG2207 AraC-type DNA-binding domain-containing prot... 179 7e-45 SMc00994 [K] COG2207 AraC-type DNA-binding domain-containing pro... 177 3e-44 BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing pro... 175 8e-44 PA1235 [K] COG2207 AraC-type DNA-binding domain-containing prote... 168 1e-41 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 248 bits (633), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/250 (53%), Positives = 160/250 (64%), Gaps = 1/250 (0%) Query: 16 IDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVW 75 I+Q D R VVA G Y G + P H HRRAQLLYG SG+MQV T D WVVPPQ AVW Sbjct: 6 IEQYDATPRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVW 65 Query: 76 IPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLH 135 IP G EH+ RML V+T S +IEP A + + CQVL V PLLR+LL+ A M Y Sbjct: 66 IPPGVEHEVRML-GVSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTE 124 Query: 136 SREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISE 195 R+ L LLL E+ AE +P HVPLPPEPR LC FL P IR+ +WA LH S Sbjct: 125 GRDGALATLLLHELAAAETLPLHVPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSL 184 Query: 196 RTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMT 255 R+F+R F TG+ F W+ RACV+ A++RLA G+ VT IA D GY+ PAAFSTMFR++ Sbjct: 185 RSFNRTFRRYTGLSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVL 244 Query: 256 GHMPSAHPAA 265 G PSA A Sbjct: 245 GQPPSAFQAG 254 >mll2686 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 292 Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 142/244 (58%) Query: 19 VDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPS 78 ++ +A P VA +Y G P H HRR+QLL+ L G++ V T G W+VPP HA+WIP+ Sbjct: 26 LEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHAMWIPA 85 Query: 79 GREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLHSRE 138 G EH ML V+ S ++ P P + +V+ V L+ L++E+ ++ L R Sbjct: 86 GIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRG 145 Query: 139 ENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISERTF 198 +++LLL EI E P +P P + RL LC RF+AAPS + +WA +S R+F Sbjct: 146 GLIMKLLLHEIPTLPERPLGLPFPSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSF 205 Query: 199 SRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTGHM 258 +R F QTG+ WR +AC+ A+ RLA G+P+T +A DLGY+ AF TMF++M G Sbjct: 206 TRAFQRQTGLSLSTWRQQACLFAALPRLADGEPITRVALDLGYDSVPAFITMFKRMLGSS 265 Query: 259 PSAH 262 P + Sbjct: 266 PRGY 269 >SMc00994 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 260 Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 141/247 (57%), Gaps = 2/247 (0%) Query: 16 IDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVW 75 ++ ++ PV+A G Y G P HSH R QL + SG++ V T+ G W++PP HA+ Sbjct: 10 LEWIEKANAPVLAIGRDYACGLTVPSHSHSRTQLWWARSGVVLVYTSGGRWMIPPGHALL 69 Query: 76 IPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLH 135 IP+G EH + M+ V S +I PE + A VLE+ L+ L+ E Sbjct: 70 IPAGIEHSAEMVSDVRMHSIYISPEASE--ARRPLVLEMSALVGSLIDELVGAGNEASSE 127 Query: 136 SREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISE 195 RE ++ LLL EI R + P +P P + +L LC +FL APS + WA ++ IS Sbjct: 128 RRESLMMELLLTEIPRLNQRPLGLPFPRDRKLAALCRQFLEAPSASANIDAWAARMGISR 187 Query: 196 RTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMT 255 R+F+R F +TG+ F WR AC+ ++ R+A G+P+TT+A D GYE AAF+TMFR+M Sbjct: 188 RSFTRLFRQETGVSFVTWRQHACIFASLPRIADGEPITTVALDAGYENVAAFTTMFRRML 247 Query: 256 GHMPSAH 262 G PS + Sbjct: 248 GAPPSVY 254 >BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 300 Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 146/255 (57%), Gaps = 1/255 (0%) Query: 16 IDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVW 75 I ++ + P +A +Y G P HSH RAQLL G++ V T G W++P HA+W Sbjct: 36 IAMLESMTGPAIALPTRYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMW 95 Query: 76 IPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLH 135 IP+G EH +L V S +I + V + V+ + L+R L+I+AT D Sbjct: 96 IPAGVEHSVAILGDVFMRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPE 155 Query: 136 SREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISE 195 SR+ +I L+L ++ E P +P P +PRL +LC F+ PS R+ +WA ++ +S Sbjct: 156 SRDGLVIELILRDLHTLPEYPLGLPFPSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSR 215 Query: 196 RTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMT 255 R+F+R F +TG+ WR +AC+ A+ RL+ G+PVT++A DLGY+ +AF+TMFR+M Sbjct: 216 RSFTRHFQRETGVSLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRML 275 Query: 256 GHMPSAH-PAAQAAP 269 G P + P AP Sbjct: 276 GVPPKFYQPRLDVAP 290 >PA1235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 260 Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 137/245 (55%) Query: 24 RPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPSGREHQ 83 RPV A Y HG H H RAQL++ LSG++ V TA+G WVVPP VW+P+G EH Sbjct: 9 RPVFAYAQDYLHGERVELHRHSRAQLIHALSGVVTVGTAEGTWVVPPGRGVWLPAGIEHA 68 Query: 84 SRMLQAVTTCSAFIEPEHAPRVASSCQVLEVRPLLRELLIEATRMDPHYVLHSREENLIR 143 R V + FI P+ + C+V++V PLLR+L++ A R+ P Y R+E ++ Sbjct: 69 LRFAGQVRMRTLFIAPQARHDLPRDCRVVDVPPLLRQLIVAAMRIAPDYPPGGRDERVME 128 Query: 144 LLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISERTFSRRFL 203 L+LDE+ + HVP P +PRL LC A P+ A +L +S RT +R F Sbjct: 129 LILDELRVLPILALHVPQPVDPRLAALCRSLRAEPAADWSLGDAARRLGVSPRTLTRAFQ 188 Query: 204 AQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTGHMPSAHP 263 +TG+ F QW R ++ ++ LA G + +A DLGY+ +AFS MFR+ G PS + Sbjct: 189 RETGLSFVQWLRRMRLLASLDALAAGHSILEVALDLGYDSQSAFSAMFRRTLGVSPSLYF 248 Query: 264 AAQAA 268 AA Sbjct: 249 GRGAA 253