BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0147.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0927 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   256   1e-68
PA5308 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   233   1e-61
NMB1650 [K] COG1522 Transcriptional regulators Nme Neisseria men...   202   4e-52
NMA1905 [K] COG1522 Transcriptional regulators NmA Neisseria men...   201   5e-52
VC1904 [K] COG1522 Transcriptional regulators Vch Vibrio cholerae     190   1e-48

>RSc0927 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 165

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 141/158 (89%)

Query: 1   MRTQQQSVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGY 60
           MRTQ++ VR LDKLD RIL +LQKDGR+SMKEL + VGL++TPCIERV+R+ER+  I GY
Sbjct: 1   MRTQRKPVRALDKLDRRILDLLQKDGRLSMKELSDAVGLTITPCIERVKRLERERFILGY 60

Query: 61  YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 120
           YAR+NP  LGA+LLVFVEI+L  KSGNMFEQFRREVLRI EV ECHLVSGDFDYLIKARI
Sbjct: 61  YARLNPAMLGASLLVFVEISLGSKSGNMFEQFRREVLRISEVLECHLVSGDFDYLIKARI 120

Query: 121 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLAL 158
           R M+EYR+LLGDILLQLPGA QSKSY+VMEEIKETLA+
Sbjct: 121 REMSEYRRLLGDILLQLPGAVQSKSYIVMEEIKETLAI 158


>PA5308 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 162

 Score =  233 bits (594), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/162 (67%), Positives = 136/162 (83%)

Query: 1   MRTQQQSVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGY 60
           MRTQ QS R LDK+D  IL +LQ++GRIS  ELGE+VGLS TPC ERVRR+ER+G+I GY
Sbjct: 1   MRTQHQSKRELDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGY 60

Query: 61  YARVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARI 120
           +AR+NP+ L A+LLVFVEI+L++KSG+ FE+FRR VL++P V ECHLVSG FDYL+KARI
Sbjct: 61  HARLNPQHLKASLLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARI 120

Query: 121 RGMAEYRKLLGDILLQLPGAAQSKSYVVMEEIKETLALPLDD 162
             MA YRKLLGDILL+LP   +SKSY+VMEE+KE+L LP+ D
Sbjct: 121 SEMASYRKLLGDILLKLPHVRESKSYIVMEEVKESLDLPVPD 162


>NMB1650 [K] COG1522 Transcriptional regulators Nme Neisseria meningitidis
           MC58
          Length = 154

 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 122/154 (79%)

Query: 8   VRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPE 67
           ++ LDK+D RIL +LQ++ RI M EL E+VGLS TP  ERVRR+ER+  I+GY+A +NP 
Sbjct: 1   MKELDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPH 60

Query: 68  SLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYR 127
            LG  LLVFVE+ L  KSGN+FE F++EVL+IP++ ECHLVSG++DYLIK R+  M+ YR
Sbjct: 61  LLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRLPDMSAYR 120

Query: 128 KLLGDILLQLPGAAQSKSYVVMEEIKETLALPLD 161
            +LG+ILLQLP A++S+SYVVMEE+KE   L LD
Sbjct: 121 DMLGNILLQLPAASESRSYVVMEEVKENPVLDLD 154


>NMA1905 [K] COG1522 Transcriptional regulators NmA Neisseria meningitidis
           Z2491
          Length = 154

 Score =  201 bits (511), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 122/154 (79%)

Query: 8   VRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPE 67
           ++ LDK+D RIL +LQ++ RI M EL E+VGLS TP  ERVRR+ER+  I+GY+A +NP 
Sbjct: 1   MKELDKIDFRILKILQQNARIPMMELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPH 60

Query: 68  SLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYR 127
            LG  LLVFVE+ L  KSGN+FE F++EVL+IP++ ECHLVSG++DYLIK R+  M+ YR
Sbjct: 61  LLGKPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRLPDMSAYR 120

Query: 128 KLLGDILLQLPGAAQSKSYVVMEEIKETLALPLD 161
            +LG+ILLQLP A++S+SYVVMEE+KE   L LD
Sbjct: 121 DMLGNILLQLPAASESRSYVVMEEVKENPVLDLD 154


>VC1904 [K] COG1522 Transcriptional regulators Vch Vibrio cholerae
          Length = 164

 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 118/153 (77%)

Query: 3   TQQQSVRTLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYA 62
           + ++  + LD++D  IL  LQKDGRIS  EL ++VGLS TPC+ERVRR+ER G ITGY A
Sbjct: 4   SYKKPSKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTA 63

Query: 63  RVNPESLGATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRG 122
            +NP+ L A+LLVFVEITLN  + ++FEQF   V ++ ++QECHLVSGDFDYL+K R+  
Sbjct: 64  LLNPQYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSD 123

Query: 123 MAEYRKLLGDILLQLPGAAQSKSYVVMEEIKET 155
           M  YR+LLGD LL+LPG   +++YVVMEE+K+T
Sbjct: 124 MGAYRRLLGDTLLRLPGVNDTRTYVVMEEVKQT 156