BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0132.p         (200 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1403 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr...   113   3e-25

>VC1403 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio
           cholerae
          Length = 641

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 105/170 (61%), Gaps = 1/170 (0%)

Query: 30  REAEAQRKRARTLAKQQQAAERIAAATGELSSGINEAASAAEQLRRAANQISAGAEEASG 89
           +EA+  R++ARTLA++QQAAER+A+AT EL +G+ E++SA  QLR +  QI+ GAEE+S 
Sbjct: 29  KEADDLRRQARTLARKQQAAERVASATAELLAGLEESSSAMTQLRSSMEQIAVGAEESSS 88

Query: 90  AAQESTSAFQLVTESIGIQLQSAEVSESKVNACQLVITSTSSDVANLIANVTVAGQRQQG 149
           A ++S +A   +   I  Q   A  S+  +   +  I   ++ +  +++NV  + +RQ  
Sbjct: 89  ATKQSETAVSQMNNFINEQATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQND 148

Query: 150 SVAMVSELEAQASNIGDIVKAVARIADQTNLLALNAAXRRQARQGLCGGG 199
           SV  + EL  QA+ I D VK V  IADQTNLLALNAA     R G  G G
Sbjct: 149 SVKRMIELSEQAAKINDAVKQVIHIADQTNLLALNAAI-EAGRAGKHGKG 197