BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0123.p (388 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC1394 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr... 114 5e-25 CAC0120 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clo... 84 7e-16 VCA1088 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vib... 83 9e-16 VC0840 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr... 83 1e-15 PA1251 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu... 80 5e-15 >VC1394 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 411 Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 177/369 (47%), Gaps = 20/369 (5%) Query: 2 LPRSESRCLVGTMALALLVLLLHFAVDS---------ESGIVALLVAASVVVGSNLGLYW 52 L ++ R L T+ L+ VLLL + I AL++ + +V S L+ Sbjct: 9 LENNKKRYLFFTITLSCTVLLLGLELVRYWTPQWFYLPFAITALILTMTALVFSQGNLFV 68 Query: 53 -WLRRLSAGKD-------AAFGKVVDQHLVLEQEMGARLAEAVGDTEFAAIALVKQVREI 104 +L+++ + +A +D++ L + + D + A ++ + + Sbjct: 69 RFLQQIHEQETMKQKETVSAICDWIDEYRDLNGLVADHIENVNSDAQKATEDILNHICSL 128 Query: 105 HEAAAALVRYLDQSSLQSAALEREIDGGMEKISSISTFIRELPDRIRQDMDAIHEASREI 164 AAA YL S + +D IS+++ R L I+ + +++ + Sbjct: 129 DHAAANFTHYLKDMEFDSQNMVSSLDEHTLVISNLADSTRSLMSNIQTERKQVNDVLNRV 188 Query: 165 QELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAVVAAEVRNLAISATQAANVID 224 L ++ +I +I +T LLALNAAIEAAR+G+ GRGFAVVA EVR+LA A +AA+ I Sbjct: 189 MGLNEITEVISKIANETNLLALNAAIEAARSGEMGRGFAVVADEVRHLAQRAGEAASQIS 248 Query: 225 EGLKKAQQKVDTGLQFRFLDESAQQLSEAAMLAESTQLLRQRYEEVRQFYKSAFSVVSSH 284 E ++ + +V + ES++Q +A M+ ES Q LRQ + VR+ + + + + Sbjct: 249 EEIESLRAEVTQRFEVAN-KESSEQNIKADMMIESVQSLRQSFSSVRELSERQITQIMLY 307 Query: 285 DAQLASDLGEILGEIQFQDIVRQRIERLREAGEQRDTLFREMAQGRDAPDM--GALAVAE 342 + L ++ + QFQDIVRQ+++ + ++ L ++ G D+ L E Sbjct: 308 NNDLEKNISGSMACTQFQDIVRQKLDSIEALMREKHLLVGDVFNGMRLNDLRHRELEYTE 367 Query: 343 KLRQVIQDY 351 LR++ +Y Sbjct: 368 TLRRLSLEY 376 >CAC0120 [NT] COG0840 Methyl-accepting chemotaxis protein Cac Clostridium acetobutylicum Length = 555 Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 30/165 (18%) Query: 118 SSLQSAALEREIDGGMEKISSIS-------TFIRELPDRIRQD--------------MDA 156 SS Q++A+E E+ ME+I+S + T EL + ++ + MD Sbjct: 292 SSDQASAVE-ELTSSMEEIASQTKVNANNATEASELGNEVKSNAEKGNNQMKQMLNSMDD 350 Query: 157 IHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAVVAAEVRNLAISA 216 I+ AS+ I K++ +I I QT +L+LNAA+EAARAG G+GFAVVA EVRNLA + Sbjct: 351 INAASKNIS---KIIKVIDDIAFQTNILSLNAAVEAARAGQYGKGFAVVAEEVRNLAAKS 407 Query: 217 TQAANVIDEGLKKAQQKVDTGLQF-----RFLDESAQQLSEAAML 256 AA E ++ + +KV+TG +F LDE Q +S++A L Sbjct: 408 ANAARETTEMIENSIRKVETGTEFAKETAAALDEIVQGISKSAQL 452 >VCA1088 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 384 Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 3/100 (3%) Query: 139 ISTFIRELPDRIRQDMDA---IHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARA 195 I F++ L D + + A IH+ S+++ + KL++ ++ + QT LLALNAAIEAARA Sbjct: 150 IQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAARA 209 Query: 196 GDAGRGFAVVAAEVRNLAISATQAANVIDEGLKKAQQKVD 235 G+AGRGFAVVA EVRNL+I A I+ +K AQ VD Sbjct: 210 GEAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQDTVD 249 >VC0840 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio cholerae Length = 626 Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 27/242 (11%) Query: 56 RLSAGKDAAFGKVVD---------QHLVLEQEMGARLAEAVGD-----TEFAAIALVKQV 101 R+ D F K+++ Q +V E +M + + E ++ Q Sbjct: 321 RIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQY 380 Query: 102 REIHEAAAAL------VRYLDQSSLQSAALEREIDG----GMEKISSISTFIRELPDRIR 151 RE+ A+++ + Q + +++ + +I+G G+ +SS++ + L +++ Sbjct: 381 RELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLD 440 Query: 152 QDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAGDAGRGFAVVAAEVRN 211 + I + +R+ Q + ++ I I QT LLALNAAIEAARAG+ GRGFAVVA EVR+ Sbjct: 441 KTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIEAARAGENGRGFAVVADEVRS 500 Query: 212 LAISATQAANVIDEGLKKAQQKVDTGLQFRFLDESAQQLSEAAML-AESTQLLRQRYEEV 270 LAI ++ I + Q+ ++ L +DES SE + A+S Q L + V Sbjct: 501 LAIKTQESTKNIGSIIHILQE--NSLLSVHVMDESFNIASETMTISADSKQCLDNISQSV 558 Query: 271 RQ 272 Q Sbjct: 559 IQ 560 >PA1251 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas aeruginosa Length = 541 Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 6/175 (3%) Query: 78 EMGAR-LAEAVGDTEFAAIALVKQVREIHEAAAALVRYLDQSSLQSAALEREIDGGMEKI 136 E G R LA + E AA A V E+ A + R ++ S+ ER G ++ Sbjct: 285 EEGNRSLARQNDEIEMAATA----VNEMSAAVEEVARNASSTAEASSLSERAAGNGRARV 340 Query: 137 SSISTFIRELPDRIRQDMDAIHEASREIQELGKLVSMIKQIGRQTELLALNAAIEAARAG 196 IR++ I Q + + + Q++GK++ +I+ I QT LLALNAAIEAARAG Sbjct: 341 GQTVRSIRQMNAEIGQTARLVEGLASQAQDIGKVLDVIRAIAEQTNLLALNAAIEAARAG 400 Query: 197 DAGRGFAVVAAEVRNLAISATQAANVIDEGLKKAQQKVDTGLQ-FRFLDESAQQL 250 + GRGFAVVA EVR LA Q+ + I+ + ++ DT + R D+ A+Q+ Sbjct: 401 EQGRGFAVVAEEVRALAHRTQQSTHEIEGMIASVREGTDTAVSAMRENDQRARQM 455