BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0120.p (521 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 346 7e-95 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 327 5e-89 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 324 4e-88 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 309 1e-83 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 300 6e-81 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 346 bits (888), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 232/540 (42%), Positives = 331/540 (61%), Gaps = 53/540 (9%) Query: 4 LSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRET--------------IVYANKLK 49 +S+M+IGV+L FA L++ L+ A +GI L + I +N++K Sbjct: 3 ISDMRIGVRLGAAFA---LVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIK 59 Query: 50 NEQ------LEPLYLAREALDQTGIAARNAYVFVSDADAKNELN---IVDEQKAIYLRQL 100 N L L L +T + A + ++A A L D+ KA++ Q Sbjct: 60 NNGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQF 119 Query: 101 QLLEPRLADRAGFAAVREGLLQMAEELKRPRRYRDSGALEAYRDFLVNECSPLRRKIVAN 160 R+ + A +++ D+ ++ R + S L+ + Sbjct: 120 DA-------RSAYGA----------SVRKFFALVDADNVQEARALYQGDMSRLQDRYYVL 162 Query: 161 INQLIDQISAESTTAGDTAENAAKQALLLISL--LAGLALLIAVVIAFFITRSLLRQLGG 218 +++++D + E D +E AA+ A I + LA LA L+A+ FITR++ R + Sbjct: 163 VDKMVDHQAGE--MEHDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPIN- 219 Query: 219 EPAYAMGIAQRIAHGDLAVDVVTRSHDQ-SSLLYAIKMMRDSLSRIVAQVRQGTDSIERA 277 +AM +A+ +A G+L + + D+ LL A+K M ++L IV+QVR GTD+I RA Sbjct: 220 ---HAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRA 276 Query: 278 CSEISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLAGSASSIALKG 337 SE++SGN DLS RTE+QASSLEETA+AMEQ+TS V+Q+ADNA +A++LA +AS +A KG Sbjct: 277 SSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKG 336 Query: 338 GQMMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVE-ARAGEGGRGFAVVA 396 G + + + TM I+ SS KIVDII VIDGIAFQTNILALNAAVE ARAGE GRGFAVVA Sbjct: 337 GDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 396 Query: 397 SEVRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEIT 456 EVR+LAQRSAAAAKEIK LI SV V +G+ V+ AG+ + ++V +QNV+ +++EI+ Sbjct: 397 GEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEIS 456 Query: 457 ASSREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVAPD 516 ASSREQS GIEQ+N+AI+ MD+ TQ+N++LVE+SA AA+AL QA LA +VSTFK+ D Sbjct: 457 ASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLHAD 516 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 327 bits (837), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 190/313 (60%), Positives = 245/313 (78%), Gaps = 1/313 (0%) Query: 210 RSLLRQLGGEPAYAMGIAQRIAHGDLAVDVVTRSHDQSSLLYAIKMMRDSLSRIVAQVRQ 269 R L R LGG+PAYA +A RIA GDL+V++ TR D+ SLLYA+ MR +L + + ++R Sbjct: 216 RGLQRALGGDPAYAAEVANRIAGGDLSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRG 275 Query: 270 GTDSIERACSEISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLAGS 329 +++I A EI+SGN DLS RTE+QASSLEETASAME++ S V+Q+ADNA QANQLA S Sbjct: 276 ASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVS 335 Query: 330 ASSIALKGGQMMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVE-ARAGEG 388 AS +A++GG ++ VV TM I+ SS KIVDII VIDGIAFQTNILALNAAVE ARAGE Sbjct: 336 ASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 395 Query: 389 GRGFAVVASEVRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQNV 448 GRGFAVVA EVR+LAQRSAAAAKEIK LI SV V++GS LV+ AG TM E+V SV+ V Sbjct: 396 GRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRV 455 Query: 449 SKVIAEITASSREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLARLV 508 + ++ EITA+S+EQ +GIE+V+ A++ +D+ TQQN+ALVEQ+AAAA++L QA SL ++V Sbjct: 456 TDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVV 515 Query: 509 STFKVAPDALALR 521 + F++ P A+R Sbjct: 516 AQFRLDPTMSAVR 528 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 324 bits (830), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 194/327 (59%), Positives = 251/327 (76%), Gaps = 2/327 (0%) Query: 188 LLISLLAGLALLIAVVIA-FFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVVTRSHDQ 246 L+ +L+A L + AV +A F I R++ R LGGEPAYA IA+RIA GDLAV V TR D+ Sbjct: 187 LIANLIAILVVGGAVTLAMFLIIRNVQRGLGGEPAYATEIARRIADGDLAVRVQTRPDDR 246 Query: 247 SSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLEETASAM 306 +S+L+A+ M+ L+ + ++ DSI A +I++GNADLS RTE QASSLEETAS+M Sbjct: 247 NSMLFAMARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQRTEEQASSLEETASSM 306 Query: 307 EQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVDIISVID 366 E++TS V+Q+ADNA QA+ LA +AS IA+KGG+++G VV TM I+ SS KI DII VI+ Sbjct: 307 EELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAGINDSSKKIADIIGVIE 366 Query: 367 GIAFQTNILALNAAVE-ARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVAKVE 425 GIAFQTNILALNAAVE ARAGE GRGFAVVA EVR+LAQRSA AAKEIK LIS SV +VE Sbjct: 367 GIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKVLISDSVGRVE 426 Query: 426 SGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEVTQQNSA 485 +G+ LV AG + E+V +V+ V+ ++ EI+A+S EQS+GIEQVN A++ MDEVTQQN+A Sbjct: 427 NGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAA 486 Query: 486 LVEQSAAAAEALTAQAQSLARLVSTFK 512 LVE++AAAA +L QA L V++F+ Sbjct: 487 LVEEAAAAALSLEEQATLLRDAVASFR 513 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 172/299 (57%), Positives = 226/299 (75%), Gaps = 1/299 (0%) Query: 217 GGEPAYAMGIAQRIAHGDLAVDVVTRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIER 276 GGEP+ A +A GDL+ + + D++SLL +K M+ SLS IVA VR +S+ Sbjct: 216 GGEPSVAAQAVSAMAQGDLSRVIAVDADDRTSLLAKLKEMQASLSGIVATVRNNAESVAT 275 Query: 277 ACSEISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLAGSASSIALK 336 A ++I+ GN DLS RTE+QAS+L+ET++ M+++ S V +A+NA QANQLA ASS+A + Sbjct: 276 ASAQIAQGNQDLSHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAE 335 Query: 337 GGQMMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVE-ARAGEGGRGFAVV 395 GG+++ VV M+ I+ S KI DII VIDGIAFQTNILALNAAVE ARAGE GRGFAVV Sbjct: 336 GGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 396 ASEVRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEI 455 A+EVR+LAQRSAAAAKEIK LI++SV +VE G+ LV AG TM ++VG++Q VS ++AEI Sbjct: 396 AAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEI 455 Query: 456 TASSREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLARLVSTFKVA 514 +++S EQS+G+ QV A+S MDE TQQN+ALVEQSAAAA +L QAQ L + V+ FK+A Sbjct: 456 SSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKLA 514 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 300 bits (767), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 184/307 (59%), Positives = 238/307 (77%), Gaps = 1/307 (0%) Query: 208 ITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVVTRSHDQSSLLYAIKMMRDSLSRIVAQV 267 + R L RQLGG+PAYA IA RIA GDLA+ V TR D+ S+L+A+ M+ L+ ++ + Sbjct: 207 LARGLQRQLGGDPAYAADIAARIAAGDLAMRVETRPGDRDSVLFAMAQMQRELTGTISHI 266 Query: 268 RQGTDSIERACSEISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLA 327 + DSI A +I++GNADLS RTE+QASSLEETAS+ME++TS V+Q+ADNA QA+ LA Sbjct: 267 KHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLA 326 Query: 328 GSASSIALKGGQMMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVE-ARAG 386 +AS +A+KGG+++G VV TM I+ SS KI DII VI+GIAFQTNILALNAAVE ARAG Sbjct: 327 VNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAG 386 Query: 387 EGGRGFAVVASEVRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQ 446 E GRGFAVVA EVR+LAQRSA AAKEIKELI SV +V +G+ LV+ AG + E+V +V+ Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGTALVEEAGAVIDEVVVAVK 446 Query: 447 NVSKVIAEITASSREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLAR 506 V+ ++ EI+A+S EQS+GIEQVN A++ MD+VTQQN+ALVEQ+AAAA +L QAQ L Sbjct: 447 RVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAALSLEEQAQVLRT 506 Query: 507 LVSTFKV 513 V F++ Sbjct: 507 AVGRFQM 513