BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0093.p         (168 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2081 [S] COG1714 Predicted membrane protein/domain Rso Ralsto...   119   3e-27

>RSc2081 [S] COG1714 Predicted membrane protein/domain Rso Ralstonia
           solanacearum
          Length = 176

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 93/155 (60%), Gaps = 2/155 (1%)

Query: 5   TTPSLRRRLSSMLYESMLLFGVLFISGWLFSTL--LQQRHALYLRHGLEMWLFLVLALYF 62
           T P LRRRL++MLYE +LLFGVLF +  LF  L  +    A     GL++W FL L LYF
Sbjct: 20  TAPPLRRRLAAMLYEGLLLFGVLFGATALFLVLRAIVPPLARTGDVGLQVWGFLALGLYF 79

Query: 63  IWFWTHGGQTLAMKTWRFRVVDQHGAALGLWRAAWRFLLAWLWVLPGLALAAAVHGQQWT 122
           + FW   GQTLAM+TWR R+V   GA + L +A  R+LLAW+WV     +       +W 
Sbjct: 80  VGFWRKRGQTLAMQTWRIRLVSADGAPVSLGQAIARYLLAWIWVAVAAGVIHVSGLSRWA 139

Query: 123 LVLIPAGNIVLWALTARLDKDGQFLHDRLAGTRLV 157
              +    ++ WA  A LD   QFLHDRLAGTRL+
Sbjct: 140 GAGVALACVLAWAALAWLDPRRQFLHDRLAGTRLI 174