BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0070.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1186 [K] COG1737 Transcriptional regulators Rso Ralstonia sol... 362 e-100 BMEII0545 [K] COG1737 Transcriptional regulators Bme Brucella me... 178 1e-44 mlr4153 [K] COG1737 Transcriptional regulators Mlo Mesorhizobium... 175 1e-43 SMb21158 [K] COG1737 Transcriptional regulators Sme Sinorhizobiu... 155 1e-37 AGc4707 [K] COG1737 Transcriptional regulators Atu Agrobacterium... 152 1e-36 >RSp1186 [K] COG1737 Transcriptional regulators Rso Ralstonia solanacearum Length = 289 Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/294 (60%), Positives = 228/294 (77%), Gaps = 5/294 (1%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAK 60 M + +DI++RI++R++ LR AEQKVA+ +LGD+ AA SI LA++AGVS ASVTRFAK Sbjct: 1 MREPMDIVTRISQRATDLRPAEQKVAQTVLGDIAGAAEGSIQTLAERAGVSEASVTRFAK 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNA 120 AMGCRDVRE K LAQA AVGQRF DG +++PP AD + DI VLE NRA++ Sbjct: 61 AMGCRDVRELKLKLAQAAAVGQRFLDGG----ADRPPSSADGILADITHVLEANRALVRP 116 Query: 121 DMLMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAATLD 180 + AA L+GARMI FGMGGGST M+DE RYRL RLGRPV++YHDA+LQ+MVAATL Sbjct: 117 EAFRAAAAALVGARMIAVFGMGGGSTTMADEMRYRLARLGRPVSTYHDAMLQRMVAATLG 176 Query: 181 KDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDLIF 240 +DV++VFS TG VPE++ +AREYG K++A+TA+GSP+A LAD+LLPI+ +ETD IF Sbjct: 177 PEDVVVVFSVTGQVPEIIDGVNIAREYGAKVVAVTAIGSPVAALADILLPIQAMETDFIF 236 Query: 241 KPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 KPSSSRYAMM +D+L ++AL + S+E LRR+K+VLDAHRGGG+ QPLGD Sbjct: 237 KPSSSRYAMMMMIDLLATDVALQQADRSKELLRRIKHVLDAHRGGGN-RQPLGD 289 >BMEII0545 [K] COG1737 Transcriptional regulators Bme Brucella melitensis Length = 305 Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 167/296 (56%), Gaps = 5/296 (1%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAK 60 M++ DII+R+ + +++++A +L D H A+ A+I E+A +AGVS +VTRF + Sbjct: 13 MSKVADIITRLHVVAQEGSKSDRRLAGLVLADPHYASKAAISEIAARAGVSEPTVTRFCR 72 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNA 120 A+GC VR+FKF LAQA+A+G ++ +P+ E A+ + RA Sbjct: 73 ALGCDGVRDFKFFLAQALAIGGQYLTA--EIPARDVRESRIATAVTDAAIAAIQRAGDGV 130 Query: 121 DM--LMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAAT 178 DM LM+ A L + C G GG S+M++ E RL RLG PV + D LQ+M AA Sbjct: 131 DMGVLMKVAERLAAGGPVLCLGSGGMSSMLATEMENRLFRLGIPVNAQVDGQLQRMYAAV 190 Query: 179 LDKDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDL 238 + +L FS +G ++ + VAR+YG + +AITA GS LA+ AD+L+P + E Sbjct: 191 TTHETTVLAFSVSGFARSVVEAVLVARQYGAETVAITAAGSDLARAADMLIPFQPNEDGN 250 Query: 239 IFKPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 I+KP+S+RY ++A LDM+ A E LRR+K+ L+ D PLGD Sbjct: 251 IYKPTSARYGLLAILDMIATAAAEARGPKVLESLRRIKHSLNTLT-IDDPRLPLGD 305 >mlr4153 [K] COG1737 Transcriptional regulators Mlo Mesorhizobium loti Length = 293 Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 167/296 (56%), Gaps = 5/296 (1%) Query: 1 MAQTLDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAK 60 M DII+R+ S +++++A +L DL A+ A+I E+A + GVS +VTRF + Sbjct: 1 MKTPADIITRLQLMSQDGTKSDRRLAGLVLSDLDFASKAAISEIAARVGVSEPTVTRFCR 60 Query: 61 AMGCRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNA 120 +GC +R+FKF LAQA+A+G ++ + +A + A+ + RA N Sbjct: 61 NLGCEGLRDFKFYLAQAIAIGGQYLSPEPLSRDAREQRIASAITE--AAISAIQRASENL 118 Query: 121 DM--LMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAAT 178 DM L+ A L + + C G GG S+MM+ E + RL RLG PV + D LQ+M AA Sbjct: 119 DMTTLVAVAQRLATSGNVLCIGSGGISSMMATEMQNRLFRLGLPVLAQIDGQLQRMYAAV 178 Query: 179 LDKDDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDL 238 + L+ FS +G ++ + +VA++YG +AITA S LAK AD ++ ++ LE Sbjct: 179 ATPETTLVAFSVSGYARSVIEAVQVAQQYGATTVAITAPDSALAKAADTVIHLQPLEDGN 238 Query: 239 IFKPSSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 I+KP+SSRYA++A +DM+V +A E LRR+K ++ + D PLGD Sbjct: 239 IYKPTSSRYALLAIVDMIVTSVAETRGPKVLENLRRIKQSVNTLK-VDDPRLPLGD 293 >SMb21158 [K] COG1737 Transcriptional regulators Sme Sinorhizobium meliloti Length = 287 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 169/292 (57%), Gaps = 7/292 (2%) Query: 5 LDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAKAMGC 64 +DI + + E L +E ++A+ +L D A +ASI ELA KA VS +VTRF + +GC Sbjct: 1 MDIFATLQEERGRLSQSENRIADILLNDFEFAVNASIIELAGKADVSPPTVTRFCRRLGC 60 Query: 65 RDVREFKFLLAQAVAVGQRFFDGAKTVP-SEQPPELA-DVVYRDIHAVLELNRAMLNADM 122 +FK LA+ VG R+ K P S++P ++A D++ + +A+ L+R+ L+ Sbjct: 61 ESFSDFKVQLARTPYVGMRYL---KPEPKSQEPGDVAQDIITKAQNALFLLHRS-LDLVA 116 Query: 123 LMQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAATLDKD 182 + +AA L A MIY FG GG S+M++ E + RL RLG + + D +Q M+AA Sbjct: 117 IERAADRLAQAEMIYAFGSGGNSSMIAGEFQNRLFRLGLRITASSDHSMQMMMAAAARPA 176 Query: 183 DVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDLIFKP 242 DV++ S +G E++ + +ARE V IA+T GSP+A+ AD+ +P+ E I++P Sbjct: 177 DVIVGSSFSGRNAEIVRAFTLAREAKVPTIALTQSGSPVAQAADITVPVDLPEGSNIYRP 236 Query: 243 SSSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 +S+R A +A LD++ +A + + LRR+K L HR G D Q LGD Sbjct: 237 TSTRIAYIALLDIVASLVAYRVQPQATVTLRRIKQQLVVHRDGDD-RQLLGD 287 >AGc4707 [K] COG1737 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 3/291 (1%) Query: 4 TLDIISRITERSSTLRLAEQKVAEAILGDLHAAASASIGELADKAGVSVASVTRFAKAMG 63 ++DI +RI + +E+++A+ ++ D A +ASI ELA +A VS +VTRF + +G Sbjct: 8 SMDIFARIQDDKGQFSQSERRIADILVSDFEFAVNASIIELAARAEVSPPTVTRFCRRLG 67 Query: 64 CRDVREFKFLLAQAVAVGQRFFDGAKTVPSEQPPELADVVYRDIHAVLELNRAMLNADML 123 C+ +FK LA+ VG R+ + S P ++A+ V L L L+ + Sbjct: 68 CQSFSDFKVSLAKTAYVGVRYLTSEPS--STGPSDVAEEVLAKAQEALFLLHKTLDPALA 125 Query: 124 MQAAHLLLGARMIYCFGMGGGSTMMSDEARYRLVRLGRPVASYHDAVLQKMVAATLDKDD 183 +AA + + MIY FG GG S+M++ E + RL RLG V++ D +Q M+ A K+D Sbjct: 126 DEAAVKIANSGMIYAFGAGGNSSMIASEIQNRLFRLGLRVSTSADHSMQLMMTAAARKED 185 Query: 184 VLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKLADVLLPIKTLETDLIFKPS 243 V++ S +G EL+ +ARE GV IA+T +P+A AD+++ + E + IF+P+ Sbjct: 186 VIIGSSFSGRNMELVKCFRLAREMGVTTIALTQSDTPVAAAADMVVAVNVPEGNNIFRPT 245 Query: 244 SSRYAMMATLDMLVLELALLHKESSQERLRRLKYVLDAHRGGGDLHQPLGD 294 SSRYA +A +D+L A ++ S LR +K L HR D Q LGD Sbjct: 246 SSRYAYLAAVDILATLAAYQQRQRSMVTLRHIKQQLVEHRDPDD-KQLLGD 295