BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0041.0055.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstoni... 238 4e-63 ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia... 207 2e-53 ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichi... 207 2e-53 ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escheric... 207 2e-53 STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonel... 205 4e-53 >RSc2171 [E] COG2049 Allophanate hydrolase subunit 1 Rso Ralstonia solanacearum Length = 215 Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 141/198 (71%), Gaps = 1/198 (0%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPVVDLDILAHRIETTWPK 60 +P PATL QQRIWA+A A +W V +VVPGMNNLTL+ P D L + W + Sbjct: 17 VPPPATLTCQQRIWAMASRASEWAGVIDVVPGMNNLTLVFG-PQADAQALTALLREAWQE 75 Query: 61 LSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFA 120 + G+ ++I V YGG GPDL +VA HTGLS EV+ RH+ EY+VYFLGFLPGFA Sbjct: 76 SGALIADGKRIDIEVAYGGDDGPDLRDVAAHTGLSPAEVVRRHTAPEYIVYFLGFLPGFA 135 Query: 121 YMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQE 180 YMGGLD SLATPR PR+++PAGSVGIGGEQTG+YP ASPGGWQL+GRT LF P ++ Sbjct: 136 YMGGLDKSLATPRRAEPRMAVPAGSVGIGGEQTGIYPAASPGGWQLLGRTDAALFLPQRD 195 Query: 181 PPTLLRPGDRVRFTVERV 198 PP LL PGDR+RF +V Sbjct: 196 PPALLAPGDRIRFVASKV 213 >ybgJ [E] COG2049 Allophanate hydrolase subunit 1 Eco Escherichia coli K12 Length = 218 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW LA+ V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R +EIPVVYGG+ GPDL VA H GLS ++V+ HS+ EYVV+FLGF PGF Sbjct: 77 ESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L TPR PR+ +PAGSVGIGG QTGVYP+A+PGGWQLIG T+L LFDP++ Sbjct: 137 PYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPAR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 + P LLRPGD VRF ++ Sbjct: 197 DEPILLRPGDSVRFVPQK 214 >ZybgJ [E] COG2049 Allophanate hydrolase subunit 1 EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW LA+ V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R +EIPVVYGG+ GPDL VA H GLS ++V+ HS+ EYVV+FLGF PGF Sbjct: 77 ESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L TPR PR+ +PAGSVGIGG QTGVYP+A+PGGWQLIG T+L LFDP++ Sbjct: 137 PYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPAR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 + P LLRPGD VRF ++ Sbjct: 197 DEPILLRPGDSVRFVPQK 214 >ECs0736 [E] COG2049 Allophanate hydrolase subunit 1 Ecs Escherichia coli O157:H7 Length = 218 Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/198 (53%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW LA+ V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R +EIPVVYGG+ GPDL VA H GLS ++V+ HS+ EYVV+FLGF PGF Sbjct: 77 ESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L TPR PR+ +PAGSVGIGG QTGVYP+A+PGGWQLIG T+L LFDP++ Sbjct: 137 PYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPAR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 + P LLRPGD VRF ++ Sbjct: 197 DEPILLRPGDSVRFVPQK 214 >STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonella typhimurium LT2 Length = 218 Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/198 (52%), Positives = 134/198 (67%), Gaps = 2/198 (1%) Query: 1 LPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRP-VVDLDILAHRIETTWP 59 L P TL Q+RIW L + V E +PGMNN+T+I P + LD + R++ W Sbjct: 18 LEPPITLASQKRIWRLTQRLVDMPNVVEAIPGMNNITVILREPQTLALDAI-ERLQRWWE 76 Query: 60 KLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGF 119 + R+VEIPV+YGG+ GPDL VARH+GLS ++V+ H++ EYVV+FLGF PGF Sbjct: 77 ESEALEPDSRSVEIPVIYGGAGGPDLAAVARHSGLSEKQVVELHASVEYVVWFLGFQPGF 136 Query: 120 AYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQ 179 Y+G L L PR PR+ +PAGSVGIGG QTG+YP+++PGGWQLIG T L+LFDP + Sbjct: 137 PYLGNLPEPLHMPRRAEPRLQVPAGSVGIGGAQTGIYPLSTPGGWQLIGLTPLKLFDPMR 196 Query: 180 EPPTLLRPGDRVRFTVER 197 E P LLRPGD VRF ++ Sbjct: 197 ETPVLLRPGDSVRFVPQK 214