BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0049.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2061 [C] COG0377 NADH Rso Ralstonia solanacearum                   256   8e-69
NMB0242 [C] COG0377 NADH Nme Neisseria meningitidis MC58              241   3e-64
NMA0018 [C] COG0377 NADH NmA Neisseria meningitidis Z2491             238   2e-63
XF0306 [C] COG0377 NADH Xfa Xylella fastidiosa 9a5c                   238   2e-63
RP356 [C] COG0377 NADH Rpr Rickettsia prowazekii                      236   1e-62

>RSc2061 [C] COG0377 NADH Rso Ralstonia solanacearum
          Length = 160

 Score =  256 bits (655), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/128 (93%), Positives = 124/128 (96%)

Query: 1   MTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQM 60
           MTFGLACCAVEMMH GASRYDLDRFG VFRPSPRQSD+MIVAGTLCNKMAPALRKVYDQM
Sbjct: 31  MTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQM 90

Query: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQNKI 120
            EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEAL+YG+IQLQ KI
Sbjct: 91  AEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKI 150

Query: 121 KRTNTIAR 128
           +RTNTIAR
Sbjct: 151 RRTNTIAR 158


>NMB0242 [C] COG0377 NADH Nme Neisseria meningitidis MC58
          Length = 160

 Score =  241 bits (615), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 110/128 (85%), Positives = 121/128 (94%)

Query: 1   MTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQM 60
           +TFGLACCAVEMMH G +RYDLDRFG +FRPSPRQ+DLMIVAGTL NKMAPALR+VYDQ+
Sbjct: 31  VTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQL 90

Query: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQNKI 120
            EPRWV+SMGSCANGGGYYHYSYSVVRG DR+VPVDVYVPGCPPTAEAL+YG+IQLQ KI
Sbjct: 91  AEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKI 150

Query: 121 KRTNTIAR 128
           KRT+TIAR
Sbjct: 151 KRTSTIAR 158


>NMA0018 [C] COG0377 NADH NmA Neisseria meningitidis Z2491
          Length = 160

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/128 (85%), Positives = 120/128 (93%)

Query: 1   MTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQM 60
           +TFGLACCAVEMMH G +RYDLDRFG +FRPSPRQ+DLMIVAGTL NKMA ALR+VYDQ+
Sbjct: 31  VTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMASALRRVYDQL 90

Query: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQNKI 120
            EPRWV+SMGSCANGGGYYHYSYSVVRG DR+VPVDVYVPGCPPTAEAL+YG+IQLQ KI
Sbjct: 91  AEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKI 150

Query: 121 KRTNTIAR 128
           KRT+TIAR
Sbjct: 151 KRTSTIAR 158


>XF0306 [C] COG0377 NADH Xfa Xylella fastidiosa 9a5c
          Length = 191

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/127 (87%), Positives = 119/127 (93%)

Query: 1   MTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQM 60
           MTFGLACCAVEMMH GA+R DLDR+G VFRPSPRQSD+MIVAGTL NKMAPALRKVYDQM
Sbjct: 64  MTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQM 123

Query: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQNKI 120
           P+P+WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEAL+YG++QLQ KI
Sbjct: 124 PDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKI 183

Query: 121 KRTNTIA 127
            RT T A
Sbjct: 184 WRTQTNA 190


>RP356 [C] COG0377 NADH Rpr Rickettsia prowazekii
          Length = 174

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 108/124 (87%), Positives = 116/124 (93%)

Query: 1   MTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQM 60
           MTFGLACCAVEMM   ASRYD+DRFG +FRPSPRQSDLMIVAGTL NKMAPALRKVYDQM
Sbjct: 41  MTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQM 100

Query: 61  PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQNKI 120
            EP+WV+SMGSCANGGGYYH+SYSVVRGCDRIVPVDVYVPGCPPTAEAL+YG++QLQ KI
Sbjct: 101 TEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKI 160

Query: 121 KRTN 124
           KRT 
Sbjct: 161 KRTT 164