BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0042.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2054 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rso Ral...   295   2e-80
NMB0251 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Nme Nei...   243   1e-64
NMA0008 [C] COG1143 Formate hydrogenlyase subunit 6/NADH NmA Nei...   243   1e-64
XF0313 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Xfa Xyle...   227   7e-60
SMc01922 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Sme Si...   203   1e-52

>RSc2054 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Rso Ralstonia
           solanacearum
          Length = 163

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/160 (87%), Positives = 153/160 (95%)

Query: 3   AIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEER 62
           AIK+FF SL+L+ELFKGLALTGRYLF RKITV FPEEKTP+SPRFRGLHALRRYPNGEER
Sbjct: 4   AIKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEER 63

Query: 63  CIACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHI 122
           CIACKLCEAVCPA+AITIES+QR DGTRRT+RYDIDLTKCIFCGFCEE+CPVD+IVETHI
Sbjct: 64  CIACKLCEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 123 LEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162
           LEYHGEKRGDLY+TK+MLLAVGDR+E EIAA +AADA YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163


>NMB0251 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Nme Neisseria
           meningitidis MC58
          Length = 159

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 131/159 (82%)

Query: 4   IKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERC 63
           + +   + +L EL KG+ +T +  F RK T+ FPEEKTP S RFRGLHA RRYPNGEERC
Sbjct: 1   MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERC 60

Query: 64  IACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHIL 123
           IACKLCEAVCPAMAI IESE+R DGTRRT RYDIDLTKCIFCGFCEE+CP D+IVETHI 
Sbjct: 61  IACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIF 120

Query: 124 EYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162
           EYHGEK+GDL+ TK +LLA+GD+YE EIA  +AADA YR
Sbjct: 121 EYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>NMA0008 [C] COG1143 Formate hydrogenlyase subunit 6/NADH NmA Neisseria
           meningitidis Z2491
          Length = 159

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 131/159 (82%)

Query: 4   IKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGEERC 63
           + +   + +L EL KG+ +T +  F RK T+ FPEEKTP S RFRGLHA RRYPNGEERC
Sbjct: 1   MANLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERC 60

Query: 64  IACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHIL 123
           IACKLCEAVCPAMAI IESE+R DGTRRT RYDIDLTKCIFCGFCEE+CP D+IVETHI 
Sbjct: 61  IACKLCEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIF 120

Query: 124 EYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162
           EYHGEK+GDL+ TK +LLA+GD+YE EIA  +AADA YR
Sbjct: 121 EYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>XF0313 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Xfa Xylella
           fastidiosa 9a5c
          Length = 163

 Score =  227 bits (579), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 133/162 (82%)

Query: 1   MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60
           M  +  +F SL+L EL  GL LT +Y F+ K TV +P EK P SPRFRGLHALRRYPNGE
Sbjct: 2   MNRVMHYFKSLLLLELLAGLWLTLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGE 61

Query: 61  ERCIACKLCEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVET 120
           ERCIACKLCEAVCPA+AITI+S +R DGTRRT+RYDIDL KCIFCGFCEESCPVDSIVET
Sbjct: 62  ERCIACKLCEAVCPALAITIDSAKREDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVET 121

Query: 121 HILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162
           HILEYH EKRG+   TK  LLA+GDR+E EIA  RAADAA+R
Sbjct: 122 HILEYHFEKRGENIVTKPQLLAIGDRFEAEIAERRAADAAFR 163


>SMc01922 [C] COG1143 Formate hydrogenlyase subunit 6/NADH Sme Sinorhizobium
           meliloti
          Length = 164

 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 1   MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60
           M  + +   SL L+E      L+ RY F+ K T+ +P EK P+SPRFRG HALRRYPNGE
Sbjct: 2   MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 61

Query: 61  ERCIACKLCEAVCPAMAITIES-EQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119
           ERCIACKLCEA+CPA AITIE+  +R DGTRRT RYDID+ KCI+CGFC+E+CPVD+IVE
Sbjct: 62  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121

Query: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162
               E+  E R +LYY KE LLA GDR+E EIA   A D+ YR
Sbjct: 122 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 164