BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0016.p         (74 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3128 [IQR] COG1028 Dehydrogenases with different specificities...   119   2e-27
ygfF [IQR] COG1028 Dehydrogenases with different specificities (...   118   3e-27
VCA0301 [IQR] COG1028 Dehydrogenases with different specificitie...   108   4e-24
mll4297 [IQR] COG1028 Dehydrogenases with different specificitie...   100   9e-22
RSc2504 [IQR] COG1028 Dehydrogenases with different specificitie...    95   3e-20

>PA3128 [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) Pae Pseudomonas
           aeruginosa
          Length = 248

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 66/74 (89%)

Query: 1   VAAEGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAAEVANAILWLLSEEA 60
           VAAEGIRVNAVRPGLI T+IHASGGE GR++RLK  +P+ RGG+A EVA AILWL S+EA
Sbjct: 175 VAAEGIRVNAVRPGLIDTEIHASGGEPGRIERLKGGIPLGRGGTAEEVARAILWLASDEA 234

Query: 61  SYATGTFIDVSGGR 74
           SY+TGTFIDVSGGR
Sbjct: 235 SYSTGTFIDVSGGR 248


>ygfF [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) Eco Escherichia
           coli K12
          Length = 247

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 65/74 (87%)

Query: 1   VAAEGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAAEVANAILWLLSEEA 60
           VAA+GIRVN VRPG IYT++HASGGE GRVDR+K  +PM+RGG A EVA AI+WLLS++A
Sbjct: 174 VAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKA 233

Query: 61  SYATGTFIDVSGGR 74
           SY TG+FID++GG+
Sbjct: 234 SYVTGSFIDLAGGK 247


>VCA0301 [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) Vch Vibrio
           cholerae
          Length = 250

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 61/73 (83%)

Query: 1   VAAEGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAAEVANAILWLLSEEA 60
           VAAEGIRVN VRPGLIYTD+HA GGE  R++RLK+ +PM+RGG   EVA AI WL SE++
Sbjct: 177 VAAEGIRVNCVRPGLIYTDMHADGGEPDRIERLKNKIPMQRGGLPDEVAEAIYWLSSEKS 236

Query: 61  SYATGTFIDVSGG 73
           S++TG F+D++GG
Sbjct: 237 SFSTGNFLDLAGG 249


>mll4297 [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) Mlo Mesorhizobium
           loti
          Length = 251

 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 60/74 (81%)

Query: 1   VAAEGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAAEVANAILWLLSEEA 60
           VA EGIRVNAVRPG+I TDIHASGG+  RV  ++D +PMKR G+A EVA A+L+LLS+ A
Sbjct: 178 VALEGIRVNAVRPGIIDTDIHASGGQPDRVALIQDTLPMKRAGTADEVAAAVLYLLSDAA 237

Query: 61  SYATGTFIDVSGGR 74
           SY TG  ++VSGGR
Sbjct: 238 SYTTGAILNVSGGR 251


>RSc2504 [IQR] COG1028 Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) Rso Ralstonia
           solanacearum
          Length = 248

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 53/71 (74%)

Query: 4   EGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAAEVANAILWLLSEEASYA 63
           EG+RVNAVRPGLI T+IHA GG+  R  RL  A PM R G+AAEVA  I+WLLS+ ASY 
Sbjct: 178 EGVRVNAVRPGLIDTEIHACGGQPDRAQRLGAATPMGRPGTAAEVAETIVWLLSDAASYV 237

Query: 64  TGTFIDVSGGR 74
           TG  +D SGGR
Sbjct: 238 TGALLDCSGGR 248